diff --git a/awk_script_qualityFiltering_SAM b/awk_script_qualityFiltering_SAM new file mode 100644 index 0000000..c0c3bf7 --- /dev/null +++ b/awk_script_qualityFiltering_SAM @@ -0,0 +1 @@ +egrep -w 'NM:i:[0-5]|@SQ|@PG' fileName.sam | awk '($5 == 60 && $2 < 2048) || $1~/^@/' > fileName-Q60.sam