Currently Loaded Modules: 1) snakemake/5.25.0 6) libmaus2/2018.11.29 11) mpfr/3.1.3 2) dazz_db/2020.05.04 7) dascrubber/1.1 12) gcc/5.3.0 3) damasker/2020.05.04 8) dentist/1.0.0-beta.3 13) daligner/2020.01.15 4) daccord/0.0.17 9) mpc/1.0.3 5) damapper/2020.05.04 10) gmp/6.1.0 Building DAG of jobs... Using shell: /usr/bin/bash Provided cluster nodes: 10 Job counts: count jobs 1 ALL 1 collect 1 extend_dentist_config 1 extend_dentist_config_for_merge 1 mask_reads 1 mask_self 1 mask_tandem 1 merge 1 output 1 process 1 reads2db 1 ref_vs_reads_alignment 1 ref_vs_reads_alignment_block 1 reference2dam 1 self_alignment 1 self_alignment_block 1 tandem_alignment 17 [Mon Oct 26 13:42:22 2020] localcheckpoint reference2dam: input: ragtag.scaffolds_80.fasta output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx jobid: 3 Downstream jobs will be updated after completion. [Mon Oct 26 13:42:22 2020] localrule extend_dentist_config: output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json jobid: 2 [Mon Oct 26 13:42:22 2020] localcheckpoint reads2db: input: filtered_subreads.fasta output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/filtered_subreads.db, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.filtered_subreads.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.filtered_subreads.idx jobid: 6 Downstream jobs will be updated after completion. Job counts: count jobs 1 extend_dentist_config 1 [Mon Oct 26 13:42:22 2020] Finished job 2. 1 of 17 steps (6%) done Updating job 16 (self_alignment_block). Updating job 14 (self_alignment). Updating job 10 (mask_self). Updating job 13 (ref_vs_reads_alignment_block). Updating job 9 (ref_vs_reads_alignment). Updating job 15 (tandem_alignment). Updating job 11 (mask_tandem). Updating job 12 (mask_reads). Updating job 7 (collect). Updating job 8 (process). Updating job 4 (merge). Updating job 1 (output). [Mon Oct 26 13:42:32 2020] Finished job 3. 2 of 107 steps (2%) done [Mon Oct 26 13:42:32 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.7.log jobid: 91 wildcards: block_ref=7, block_reads=7 threads: 10 Submitted job 91 with external jobid 'Submitted batch job 5197807'. [Mon Oct 26 13:42:33 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.10.log jobid: 87 wildcards: block_ref=6, block_reads=10 threads: 10 Submitted job 87 with external jobid 'Submitted batch job 5197808'. [Mon Oct 26 13:42:33 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.11.log jobid: 61 wildcards: block_ref=3, block_reads=11 threads: 10 Submitted job 61 with external jobid 'Submitted batch job 5197832'. [Mon Oct 26 13:42:35 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.9.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.9.11.log jobid: 106 wildcards: block_ref=9, block_reads=11 threads: 10 Submitted job 106 with external jobid 'Submitted batch job 5197833'. [Mon Oct 26 13:42:35 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.12.log jobid: 62 wildcards: block_ref=3, block_reads=12 threads: 10 Submitted job 62 with external jobid 'Submitted batch job 5197835'. [Mon Oct 26 13:42:36 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.9.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.9.12.log jobid: 107 wildcards: block_ref=9, block_reads=12 threads: 10 Submitted job 107 with external jobid 'Submitted batch job 5197836'. [Mon Oct 26 13:42:36 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.13.log jobid: 63 wildcards: block_ref=3, block_reads=13 threads: 10 Submitted job 63 with external jobid 'Submitted batch job 5197838'. [Mon Oct 26 13:42:37 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.9.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.9.13.log jobid: 108 wildcards: block_ref=9, block_reads=13 threads: 10 Submitted job 108 with external jobid 'Submitted batch job 5197839'. [Mon Oct 26 13:42:38 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.4.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.4.log jobid: 64 wildcards: block_ref=4, block_reads=4 threads: 10 Submitted job 64 with external jobid 'Submitted batch job 5197840'. [Mon Oct 26 13:44:31 2020] Finished job 63. 3 of 107 steps (3%) done [Mon Oct 26 13:44:31 2020] Finished job 108. 4 of 107 steps (4%) done [Mon Oct 26 13:44:32 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.13.log jobid: 82 wildcards: block_ref=5, block_reads=13 threads: 10 Submitted job 82 with external jobid 'Submitted batch job 5197900'. [Mon Oct 26 13:44:32 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.13.log jobid: 97 wildcards: block_ref=7, block_reads=13 threads: 10 Submitted job 97 with external jobid 'Submitted batch job 5197901'. [Mon Oct 26 13:46:32 2020] Finished job 97. 5 of 107 steps (5%) done [Mon Oct 26 13:46:32 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.11.log jobid: 38 wildcards: block_ref=1, block_reads=11 threads: 10 Submitted job 38 with external jobid 'Submitted batch job 5197937'. [Mon Oct 26 13:46:52 2020] Finished job 82. 6 of 107 steps (6%) done [Mon Oct 26 13:46:52 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.13.log jobid: 52 wildcards: block_ref=2, block_reads=13 threads: 10 Submitted job 52 with external jobid 'Submitted batch job 5197940'. [Mon Oct 26 13:48:42 2020] Finished job 52. 7 of 107 steps (7%) done [Mon Oct 26 13:48:42 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.3.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.3.log jobid: 53 wildcards: block_ref=3, block_reads=3 threads: 10 Submitted job 53 with external jobid 'Submitted batch job 5197965'. [Mon Oct 26 13:50:02 2020] Finished job 91. 8 of 107 steps (7%) done [Mon Oct 26 13:50:02 2020] Finished job 87. 9 of 107 steps (8%) done [Mon Oct 26 13:50:02 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.6.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.6.log jobid: 83 wildcards: block_ref=6, block_reads=6 threads: 10 Submitted job 83 with external jobid 'Submitted batch job 5197978'. [Mon Oct 26 13:50:03 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.8.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.8.8.log jobid: 98 wildcards: block_ref=8, block_reads=8 threads: 10 Submitted job 98 with external jobid 'Submitted batch job 5197979'. [Mon Oct 26 13:50:42 2020] Finished job 61. 10 of 107 steps (9%) done [Mon Oct 26 13:50:42 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.10.log jobid: 37 wildcards: block_ref=1, block_reads=10 threads: 10 Submitted job 37 with external jobid 'Submitted batch job 5197989'. Updating job 25 (ref_vs_reads_alignment_block). Updating job 21 (ref_vs_reads_alignment). Updating job 24 (mask_reads). Updating job 19 (collect). Updating job 20 (process). Updating job 18 (merge). [Mon Oct 26 13:51:01 2020] Finished job 6. 11 of 734 steps (1%) done [Mon Oct 26 13:51:01 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.12.log jobid: 39 wildcards: block_ref=1, block_reads=12 threads: 10 Submitted job 39 with external jobid 'Submitted batch job 5197992'. [Mon Oct 26 13:51:35 2020] Finished job 62. 12 of 734 steps (2%) done [Mon Oct 26 13:51:35 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.4.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.4.log jobid: 54 wildcards: block_ref=3, block_reads=4 threads: 10 Submitted job 54 with external jobid 'Submitted batch job 5198025'. [Mon Oct 26 13:52:08 2020] Finished job 107. 13 of 734 steps (2%) done [Mon Oct 26 13:52:08 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.7.log jobid: 84 wildcards: block_ref=6, block_reads=7 threads: 10 Submitted job 84 with external jobid 'Submitted batch job 5198062'. [Mon Oct 26 13:52:19 2020] Finished job 106. 14 of 734 steps (2%) done [Mon Oct 26 13:52:19 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.12.log jobid: 96 wildcards: block_ref=7, block_reads=12 threads: 10 Submitted job 96 with external jobid 'Submitted batch job 5198066'. [Mon Oct 26 13:52:52 2020] Finished job 64. 15 of 734 steps (2%) done [Mon Oct 26 13:52:52 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.8.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.8.9.log jobid: 99 wildcards: block_ref=8, block_reads=9 threads: 10 Submitted job 99 with external jobid 'Submitted batch job 5198072'. [Mon Oct 26 13:55:26 2020] Finished job 38. 16 of 734 steps (2%) done [Mon Oct 26 13:55:26 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.1.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.1.log jobid: 28 wildcards: block_ref=1, block_reads=1 threads: 10 Submitted job 28 with external jobid 'Submitted batch job 5198161'. [Mon Oct 26 13:56:44 2020] Finished job 53. 17 of 734 steps (2%) done [Mon Oct 26 13:56:44 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.13.log jobid: 40 wildcards: block_ref=1, block_reads=13 threads: 10 Submitted job 40 with external jobid 'Submitted batch job 5198199'. [Mon Oct 26 13:58:01 2020] Finished job 83. 18 of 734 steps (2%) done [Mon Oct 26 13:58:01 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.12.log jobid: 81 wildcards: block_ref=5, block_reads=12 threads: 10 Submitted job 81 with external jobid 'Submitted batch job 5198222'. [Mon Oct 26 13:58:45 2020] Finished job 40. 19 of 734 steps (3%) done [Mon Oct 26 13:58:45 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.5.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.5.log jobid: 55 wildcards: block_ref=3, block_reads=5 threads: 10 Submitted job 55 with external jobid 'Submitted batch job 5198256'. [Mon Oct 26 13:58:56 2020] Finished job 37. 20 of 734 steps (3%) done [Mon Oct 26 13:58:56 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.2.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.2.log jobid: 29 wildcards: block_ref=1, block_reads=2 threads: 10 Submitted job 29 with external jobid 'Submitted batch job 5198263'. [Mon Oct 26 13:59:07 2020] Finished job 84. 21 of 734 steps (3%) done [Mon Oct 26 13:59:07 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.5.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.5.log jobid: 44 wildcards: block_ref=2, block_reads=5 threads: 10 Submitted job 44 with external jobid 'Submitted batch job 5198269'. [Mon Oct 26 13:59:51 2020] Finished job 54. 22 of 734 steps (3%) done [Mon Oct 26 13:59:51 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.8.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.8.13.log jobid: 103 wildcards: block_ref=8, block_reads=13 threads: 10 Submitted job 103 with external jobid 'Submitted batch job 5198277'. [Mon Oct 26 14:00:13 2020] Finished job 39. 23 of 734 steps (3%) done [Mon Oct 26 14:00:13 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.9.log jobid: 59 wildcards: block_ref=3, block_reads=9 threads: 10 Submitted job 59 with external jobid 'Submitted batch job 5198289'. [Mon Oct 26 14:00:57 2020] Finished job 98. 24 of 734 steps (3%) done [Mon Oct 26 14:00:57 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.11.log jobid: 88 wildcards: block_ref=6, block_reads=11 threads: 10 Submitted job 88 with external jobid 'Submitted batch job 5198309'. [Mon Oct 26 14:01:08 2020] Finished job 96. 25 of 734 steps (3%) done [Mon Oct 26 14:01:08 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.12.log jobid: 89 wildcards: block_ref=6, block_reads=12 threads: 10 Submitted job 89 with external jobid 'Submitted batch job 5198331'. [Mon Oct 26 14:02:14 2020] Finished job 103. 26 of 734 steps (4%) done [Mon Oct 26 14:02:14 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.8.log jobid: 58 wildcards: block_ref=3, block_reads=8 threads: 10 Submitted job 58 with external jobid 'Submitted batch job 5198369'. [Mon Oct 26 14:03:42 2020] Finished job 28. 27 of 734 steps (4%) done [Mon Oct 26 14:03:42 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.9.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.9.9.log jobid: 104 wildcards: block_ref=9, block_reads=9 threads: 10 Submitted job 104 with external jobid 'Submitted batch job 5198410'. [Mon Oct 26 14:04:04 2020] Finished job 99. 28 of 734 steps (4%) done [Mon Oct 26 14:04:04 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.4.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.4.log jobid: 43 wildcards: block_ref=2, block_reads=4 threads: 10 Submitted job 43 with external jobid 'Submitted batch job 5198415'. [Mon Oct 26 14:06:27 2020] Finished job 29. 29 of 734 steps (4%) done [Mon Oct 26 14:06:27 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.10.log jobid: 60 wildcards: block_ref=3, block_reads=10 threads: 10 Submitted job 60 with external jobid 'Submitted batch job 5198483'. [Mon Oct 26 14:07:00 2020] Finished job 81. 30 of 734 steps (4%) done [Mon Oct 26 14:07:00 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.8.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.8.12.log jobid: 102 wildcards: block_ref=8, block_reads=12 threads: 10 Submitted job 102 with external jobid 'Submitted batch job 5198489'. [Mon Oct 26 14:07:22 2020] Finished job 55. 31 of 734 steps (4%) done [Mon Oct 26 14:07:22 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.9.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.9.10.log jobid: 105 wildcards: block_ref=9, block_reads=10 threads: 10 Submitted job 105 with external jobid 'Submitted batch job 5198496'. [Mon Oct 26 14:07:44 2020] Finished job 44. 32 of 734 steps (4%) done [Mon Oct 26 14:07:45 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.7.log jobid: 57 wildcards: block_ref=3, block_reads=7 threads: 10 Submitted job 57 with external jobid 'Submitted batch job 5198508'. [Mon Oct 26 14:08:18 2020] Finished job 88. 33 of 734 steps (4%) done [Mon Oct 26 14:08:18 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.10.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.10.10.log jobid: 109 wildcards: block_ref=10, block_reads=10 threads: 10 Submitted job 109 with external jobid 'Submitted batch job 5198518'. [Mon Oct 26 14:09:13 2020] Finished job 59. 34 of 734 steps (5%) done [Mon Oct 26 14:09:13 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.3.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.3.log jobid: 42 wildcards: block_ref=2, block_reads=3 threads: 10 Submitted job 42 with external jobid 'Submitted batch job 5198559'. [Mon Oct 26 14:09:57 2020] Finished job 89. 35 of 734 steps (5%) done [Mon Oct 26 14:09:57 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.5.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.5.log jobid: 65 wildcards: block_ref=4, block_reads=5 threads: 10 Submitted job 65 with external jobid 'Submitted batch job 5198570'. [Mon Oct 26 14:11:14 2020] Finished job 58. 36 of 734 steps (5%) done [Mon Oct 26 14:11:14 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.8.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.8.11.log jobid: 101 wildcards: block_ref=8, block_reads=11 threads: 10 Submitted job 101 with external jobid 'Submitted batch job 5198586'. [Mon Oct 26 14:12:31 2020] Finished job 43. 37 of 734 steps (5%) done [Mon Oct 26 14:12:31 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.10.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.10.11.log jobid: 110 wildcards: block_ref=10, block_reads=11 threads: 10 Submitted job 110 with external jobid 'Submitted batch job 5198610'. [Mon Oct 26 14:14:21 2020] Finished job 60. 38 of 734 steps (5%) done [Mon Oct 26 14:14:21 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.13.log jobid: 90 wildcards: block_ref=6, block_reads=13 threads: 10 Submitted job 90 with external jobid 'Submitted batch job 5198642'. [Mon Oct 26 14:16:22 2020] Finished job 90. 39 of 734 steps (5%) done [Mon Oct 26 14:16:22 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.6.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.6.log jobid: 66 wildcards: block_ref=4, block_reads=6 threads: 10 Submitted job 66 with external jobid 'Submitted batch job 5198672'. [Mon Oct 26 14:16:44 2020] Finished job 57. 40 of 734 steps (5%) done [Mon Oct 26 14:16:44 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.4.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.4.log jobid: 31 wildcards: block_ref=1, block_reads=4 threads: 10 Submitted job 31 with external jobid 'Submitted batch job 5198677'. [Mon Oct 26 14:16:55 2020] Finished job 105. 41 of 734 steps (6%) done [Mon Oct 26 14:16:55 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.7.log jobid: 46 wildcards: block_ref=2, block_reads=7 threads: 10 Submitted job 46 with external jobid 'Submitted batch job 5198680'. [Mon Oct 26 14:17:28 2020] Finished job 42. 42 of 734 steps (6%) done [Mon Oct 26 14:17:28 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.7.log jobid: 67 wildcards: block_ref=4, block_reads=7 threads: 10 Submitted job 67 with external jobid 'Submitted batch job 5198695'. [Mon Oct 26 14:17:39 2020] Finished job 102. 43 of 734 steps (6%) done [Mon Oct 26 14:17:39 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.10.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.10.13.log jobid: 112 wildcards: block_ref=10, block_reads=13 threads: 10 Submitted job 112 with external jobid 'Submitted batch job 5198705'. [Mon Oct 26 14:18:34 2020] Finished job 104. 44 of 734 steps (6%) done [Mon Oct 26 14:18:34 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.10.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.10.12.log jobid: 111 wildcards: block_ref=10, block_reads=12 threads: 10 Submitted job 111 with external jobid 'Submitted batch job 5198708'. [Mon Oct 26 14:18:56 2020] Finished job 65. 45 of 734 steps (6%) done [Mon Oct 26 14:18:56 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.8.log jobid: 68 wildcards: block_ref=4, block_reads=8 threads: 10 Submitted job 68 with external jobid 'Submitted batch job 5198714'. [Mon Oct 26 14:19:51 2020] Finished job 109. 46 of 734 steps (6%) done [Mon Oct 26 14:19:51 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.9.log jobid: 86 wildcards: block_ref=6, block_reads=9 threads: 10 Submitted job 86 with external jobid 'Submitted batch job 5198737'. [Mon Oct 26 14:20:02 2020] Finished job 112. 47 of 734 steps (6%) done [Mon Oct 26 14:20:02 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.11.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.11.11.log jobid: 113 wildcards: block_ref=11, block_reads=11 threads: 10 Submitted job 113 with external jobid 'Submitted batch job 5198762'. [Mon Oct 26 14:21:31 2020] Finished job 101. 48 of 734 steps (7%) done [Mon Oct 26 14:21:31 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.6.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.3.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.3.6.log jobid: 56 wildcards: block_ref=3, block_reads=6 threads: 10 Submitted job 56 with external jobid 'Submitted batch job 5198830'. [Mon Oct 26 14:22:48 2020] Finished job 110. 49 of 734 steps (7%) done [Mon Oct 26 14:22:48 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.9.log jobid: 69 wildcards: block_ref=4, block_reads=9 threads: 10 Submitted job 69 with external jobid 'Submitted batch job 5198893'. [Mon Oct 26 14:24:05 2020] Finished job 66. 50 of 734 steps (7%) done [Mon Oct 26 14:24:05 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.2.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.2.log jobid: 41 wildcards: block_ref=2, block_reads=2 threads: 10 Submitted job 41 with external jobid 'Submitted batch job 5198938'. [Mon Oct 26 14:25:33 2020] Finished job 31. 51 of 734 steps (7%) done [Mon Oct 26 14:25:33 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.11.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.11.12.log jobid: 114 wildcards: block_ref=11, block_reads=12 threads: 10 Submitted job 114 with external jobid 'Submitted batch job 5199022'. [Mon Oct 26 14:25:44 2020] Finished job 46. 52 of 734 steps (7%) done [Mon Oct 26 14:25:44 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.8.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.8.10.log jobid: 100 wildcards: block_ref=8, block_reads=10 threads: 10 Submitted job 100 with external jobid 'Submitted batch job 5199043'. [Mon Oct 26 14:26:17 2020] Finished job 67. 53 of 734 steps (7%) done [Mon Oct 26 14:26:17 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.10.log jobid: 70 wildcards: block_ref=4, block_reads=10 threads: 10 Submitted job 70 with external jobid 'Submitted batch job 5199061'. [Mon Oct 26 14:27:23 2020] Finished job 86. 54 of 734 steps (7%) done [Mon Oct 26 14:27:23 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.6.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.6.log jobid: 45 wildcards: block_ref=2, block_reads=6 threads: 10 Submitted job 45 with external jobid 'Submitted batch job 5199095'. [Mon Oct 26 14:27:56 2020] Finished job 68. 55 of 734 steps (7%) done [Mon Oct 26 14:27:56 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.6.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.6.log jobid: 75 wildcards: block_ref=5, block_reads=6 threads: 10 Submitted job 75 with external jobid 'Submitted batch job 5199103'. [Mon Oct 26 14:28:07 2020] Finished job 111. 56 of 734 steps (8%) done [Mon Oct 26 14:28:07 2020] Finished job 56. 57 of 734 steps (8%) done [Mon Oct 26 14:28:07 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.7.log jobid: 76 wildcards: block_ref=5, block_reads=7 threads: 10 Submitted job 76 with external jobid 'Submitted batch job 5199112'. [Mon Oct 26 14:28:08 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.5.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.5.log jobid: 32 wildcards: block_ref=1, block_reads=5 threads: 10 Submitted job 32 with external jobid 'Submitted batch job 5199115'. [Mon Oct 26 14:31:14 2020] Finished job 41. 58 of 734 steps (8%) done [Mon Oct 26 14:31:14 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.8.log jobid: 47 wildcards: block_ref=2, block_reads=8 threads: 10 Submitted job 47 with external jobid 'Submitted batch job 5199152'. [Mon Oct 26 14:31:47 2020] Finished job 113. 59 of 734 steps (8%) done [Mon Oct 26 14:31:47 2020] Finished job 69. 60 of 734 steps (8%) done [Mon Oct 26 14:31:47 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.8.log jobid: 77 wildcards: block_ref=5, block_reads=8 threads: 10 Submitted job 77 with external jobid 'Submitted batch job 5199157'. [Mon Oct 26 14:31:48 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.8.log jobid: 92 wildcards: block_ref=7, block_reads=8 threads: 10 Submitted job 92 with external jobid 'Submitted batch job 5199158'. [Mon Oct 26 14:33:16 2020] Finished job 114. 61 of 734 steps (8%) done [Mon Oct 26 14:33:16 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.6.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.6.log jobid: 33 wildcards: block_ref=1, block_reads=6 threads: 10 Submitted job 33 with external jobid 'Submitted batch job 5199171'. [Mon Oct 26 14:34:33 2020] Finished job 45. 62 of 734 steps (8%) done [Mon Oct 26 14:34:33 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.9.log jobid: 48 wildcards: block_ref=2, block_reads=9 threads: 10 Submitted job 48 with external jobid 'Submitted batch job 5199176'. [Mon Oct 26 14:35:06 2020] Finished job 76. 63 of 734 steps (9%) done [Mon Oct 26 14:35:06 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.9.log jobid: 78 wildcards: block_ref=5, block_reads=9 threads: 10 Submitted job 78 with external jobid 'Submitted batch job 5199182'. [Mon Oct 26 14:35:17 2020] Finished job 70. 64 of 734 steps (9%) done [Mon Oct 26 14:35:17 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.9.log jobid: 93 wildcards: block_ref=7, block_reads=9 threads: 10 Submitted job 93 with external jobid 'Submitted batch job 5199185'. [Mon Oct 26 14:35:28 2020] Finished job 75. 65 of 734 steps (9%) done [Mon Oct 26 14:35:28 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.7.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.7.log jobid: 34 wildcards: block_ref=1, block_reads=7 threads: 10 Submitted job 34 with external jobid 'Submitted batch job 5199186'. [Mon Oct 26 14:36:23 2020] Finished job 100. 66 of 734 steps (9%) done [Mon Oct 26 14:36:23 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.10.log jobid: 49 wildcards: block_ref=2, block_reads=10 threads: 10 Submitted job 49 with external jobid 'Submitted batch job 5199192'. [Mon Oct 26 14:37:29 2020] Finished job 32. 67 of 734 steps (9%) done [Mon Oct 26 14:37:29 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.10.log jobid: 79 wildcards: block_ref=5, block_reads=10 threads: 10 Submitted job 79 with external jobid 'Submitted batch job 5199208'. [Mon Oct 26 14:39:08 2020] Finished job 47. 68 of 734 steps (9%) done [Mon Oct 26 14:39:08 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.10.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.10.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.10.log jobid: 94 wildcards: block_ref=7, block_reads=10 threads: 10 Submitted job 94 with external jobid 'Submitted batch job 5199227'. [Mon Oct 26 14:39:19 2020] Finished job 92. 69 of 734 steps (9%) done [Mon Oct 26 14:39:19 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.8.log jobid: 35 wildcards: block_ref=1, block_reads=8 threads: 10 Submitted job 35 with external jobid 'Submitted batch job 5199230'. [Mon Oct 26 14:40:14 2020] Finished job 33. 70 of 734 steps (10%) done [Mon Oct 26 14:40:14 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.11.log jobid: 50 wildcards: block_ref=2, block_reads=11 threads: 10 Submitted job 50 with external jobid 'Submitted batch job 5199233'. [Mon Oct 26 14:41:20 2020] Finished job 77. 71 of 734 steps (10%) done [Mon Oct 26 14:41:20 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.12.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.12.12.log jobid: 116 wildcards: block_ref=12, block_reads=12 threads: 10 Submitted job 116 with external jobid 'Submitted batch job 5199241'. [Mon Oct 26 14:41:42 2020] Finished job 48. 72 of 734 steps (10%) done [Mon Oct 26 14:41:42 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.12.log jobid: 72 wildcards: block_ref=4, block_reads=12 threads: 10 Submitted job 72 with external jobid 'Submitted batch job 5199258'. [Mon Oct 26 14:41:53 2020] Finished job 78. 73 of 734 steps (10%) done [Mon Oct 26 14:41:53 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.12.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.12.13.log jobid: 117 wildcards: block_ref=12, block_reads=13 threads: 10 Submitted job 117 with external jobid 'Submitted batch job 5199262'. [Mon Oct 26 14:42:26 2020] Finished job 34. 74 of 734 steps (10%) done [Mon Oct 26 14:42:26 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.13.log jobid: 73 wildcards: block_ref=4, block_reads=13 threads: 10 Submitted job 73 with external jobid 'Submitted batch job 5199269'. [Mon Oct 26 14:43:54 2020] Finished job 117. 75 of 734 steps (10%) done [Mon Oct 26 14:43:54 2020] Finished job 73. 76 of 734 steps (10%) done [Mon Oct 26 14:43:54 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.13.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.13.13.log jobid: 118 wildcards: block_ref=13, block_reads=13 threads: 10 Submitted job 118 with external jobid 'Submitted batch job 5199278'. [Mon Oct 26 14:43:55 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.5.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.5.log jobid: 74 wildcards: block_ref=5, block_reads=5 threads: 10 Submitted job 74 with external jobid 'Submitted batch job 5199281'. [Mon Oct 26 14:44:38 2020] Finished job 93. 77 of 734 steps (10%) done [Mon Oct 26 14:44:38 2020] Finished job 118. 78 of 734 steps (11%) done [Mon Oct 26 14:44:38 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.4.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.4.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.4.11.log jobid: 71 wildcards: block_ref=4, block_reads=11 threads: 10 Submitted job 71 with external jobid 'Submitted batch job 5199285'. [Mon Oct 26 14:44:39 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.13.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.13.ragtag.scaffolds_80.11.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.11.13.log jobid: 115 wildcards: block_ref=11, block_reads=13 threads: 10 Submitted job 115 with external jobid 'Submitted batch job 5199286'. [Mon Oct 26 14:45:23 2020] Finished job 49. 79 of 734 steps (11%) done [Mon Oct 26 14:45:23 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.6.ragtag.scaffolds_80.8.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.8.ragtag.scaffolds_80.6.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.6.8.log jobid: 85 wildcards: block_ref=6, block_reads=8 threads: 10 Submitted job 85 with external jobid 'Submitted batch job 5199302'. [Mon Oct 26 14:46:18 2020] Finished job 115. 80 of 734 steps (11%) done [Mon Oct 26 14:46:18 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.2.ragtag.scaffolds_80.12.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.12.ragtag.scaffolds_80.2.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.2.12.log jobid: 51 wildcards: block_ref=2, block_reads=12 threads: 10 Submitted job 51 with external jobid 'Submitted batch job 5199312'. [Mon Oct 26 14:47:13 2020] Finished job 79. 81 of 734 steps (11%) done [Mon Oct 26 14:47:13 2020] Finished job 35. 82 of 734 steps (11%) done [Mon Oct 26 14:47:13 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.9.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.9.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.9.log jobid: 36 wildcards: block_ref=1, block_reads=9 threads: 10 Submitted job 36 with external jobid 'Submitted batch job 5199324'. [Mon Oct 26 14:47:13 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.7.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.7.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.7.11.log jobid: 95 wildcards: block_ref=7, block_reads=11 threads: 10 Submitted job 95 with external jobid 'Submitted batch job 5199325'. [Mon Oct 26 14:47:24 2020] Finished job 94. 83 of 734 steps (11%) done [Mon Oct 26 14:47:24 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.1.ragtag.scaffolds_80.3.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.3.ragtag.scaffolds_80.1.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.1.3.log jobid: 30 wildcards: block_ref=1, block_reads=3 threads: 10 Submitted job 30 with external jobid 'Submitted batch job 5199326'. [Mon Oct 26 14:49:14 2020] Finished job 72. 84 of 734 steps (11%) done [Mon Oct 26 14:49:14 2020] rule self_alignment_block: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.5.ragtag.scaffolds_80.11.las, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.11.ragtag.scaffolds_80.5.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/self-alignment.5.11.log jobid: 80 wildcards: block_ref=5, block_reads=11 threads: 10 Submitted job 80 with external jobid 'Submitted batch job 5199355'. [Mon Oct 26 14:49:25 2020] Finished job 50. 85 of 734 steps (12%) done [Mon Oct 26 14:49:25 2020] rule tandem_alignment: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/TAN.ragtag.scaffolds_80.las log: /lustre/project/gbru/gbru_X/RawData/dentist/logs/tandem-alignment.log jobid: 27 Submitted job 27 with external jobid 'Submitted batch job 5199358'. [Mon Oct 26 14:49:36 2020] Finished job 27. 86 of 734 steps (12%) done [Mon Oct 26 14:49:36 2020] rule mask_tandem: input: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/dentist.json, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/ragtag.scaffolds_80.dam, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.bps, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.hdr, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.idx, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/TAN.ragtag.scaffolds_80.las output: /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.tan.anno, /lustre/project/gbru/gbru_X/RawData/dentist/workdir/.ragtag.scaffolds_80.tan.data jobid: 23 WorkflowError in line 562 of /lustre/project/gbru/gbru_X/RawData/dentist/Snakefile: 'Wildcards' object has no attribute 'memory' File "/software/7/apps/snakemake/5.25.0/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 111, in run_jobs File "/software/7/apps/snakemake/5.25.0/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 920, in run