Skip to content




  • Pro


Block or Report

Block or report a-r-j

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Add an optional note:
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Hi there 👋

  • 🔭 I’m a PhD student at the University of Cambridge. I work on deep learning applied to structural biology and drug discovery.

  • I'm currently doing things with proteins at Genentech / Roche / Prescient Design

  • Previously, I was a visiting researcher at EPFL and MILA, AI Resident at X - The Moonshot Factory (formerly Google X) and an ML Consultant at Relation Therapeutics.

  • 🌱 I’m currently developing Graphein, a data processing library for geometric deep learning in biology.

    • Graphein supports construction and featurisation of:
      • Protein structure graphs
      • Protein meshes
      • Small molecule graphs
      • RNA structure graphs
      • Protein-protein interaction graphs
      • Gene regulatory interaction graphs
  • 📫 How to reach me:


  1. graphein Public

    Protein Graph Library

    Jupyter Notebook 526 65

  2. VSCode Extension for interactively visualising protein structure data in the editor

    TypeScript 52 7

  3. Working with molecular structures in pandas DataFrames

    Python 516 102

  4. R package for translating between drug identifiers using the Chemical Translation Service (CTS)

    R 3 2

  5. Repository containing a benchmark dataset for machine learning property prediction of photoswitch molecules:

    Python 53 7

  6. graphtype Public

    Type hinting for networkx Graphs

    Jupyter Notebook 4

897 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Mon Wed Fri
Activity overview
Contributed to a-r-j/graphein, rasbt/biopandas, molstar/VSCoding-Sequence and 20 other repositories

Contribution activity

September 2022

Created 4 commits in 1 repository

Created a pull request in a-r-j/graphein that received 3 comments

fix disulphide bond node filtering #205

Reference Issues/PRs #205 What does this implement/fix? Explain your changes Disulfide bond edges were adding nodes to the graph (e.g. if we are on…

+8 −3 3 comments
Opened 4 other pull requests in 3 repositories
a-r-j/graphein 2 merged
kamurani/graphein 1 open
rasbt/biopandas 1 open
Reviewed 3 pull requests in 2 repositories
a-r-j/graphein 2 pull requests
rasbt/biopandas 1 pull request
Opened 1 issue in 1 repository
Started 1 discussion in 1 repository
  • 1.5.2
    This contribution was made on Sep 19
Answered 1 discussion in 1 repository

Seeing something unexpected? Take a look at the GitHub profile guide.