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1000genomes_demo
docs
example
frepattern
functions
lcm53
lib
FastWYCore.cpp
FastWYCore.h
LampCore.cpp
LampCore.h
Makefile
README.md
ReadFile.cpp
ReadFile.h
Transaction.cpp
Transaction.h
elf.cpp
helper.h
idhelp.cpp
install.sh
lamp.cpp
lamp.h
options.cpp
options.h
parse.cpp
plink.cpp
plink.h
sets.cpp

README.md

LAMPLINK

The LAMPLINK can detect statistically significant epistatic interactions of two or more SNPs from GWAS data. This software can be used in the same way as the widely used GWAS analysis software PLINK, but LAMPLINK has the additional options for the detection of epistatic interactions with LAMP, which is a multiple testing procedure for combinatorial effects discovery. You can apply LAMPLINK to an analysis pipeline with PLINK simply by replacing plink with lamplink and adding the --lamp option.

Please see the manual page for more details.