make complex heatmaps as well as self define annotation graphics
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Visualize regulatory interactions in the side panel of PathVisio
Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
my firsr remote app
Linode guides and tutorials.
This project has been superceeded by an official Bootstrap Sass port. Please use:
Cytoscape 3 Clustering App
Parent project for all Cytoscape 3 Sub-projects.
The OpenBEL Framework Cytoscape Plugins project enables Cytoscape to access and analyze Knowledge Assembly Models.
Cytoscape 2.x series code.
Spreadsheet storage class in Ruby with Excel-style API
SQL Server Adapter For Rails
A Ruby gem to handle FASTQ files
A 3'-end adapter contaminant trimmer
A barcode demultiplexing and trimming tool for FastQ files
Quick Read Quality Control
JRuby, an implementation of Ruby on the JVM
Converter for Illumina Casava v1.7
My fork of the official Biopython repository, used for experimental branches etc
Torrent Mapping Alignment Program
a tiny graphical app kit for ruby
This plugins is intended to wrap the common software used for Next Generation Sequencing data
BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
Forms made easy for Rails! It's tied to a simple DSL, with no opinion on markup.
Short read de novo assembler using de Bruijn graphs
Windowed Adaptive Trimming for fastq files using quality