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  • make complex heatmaps as well as self define annotation graphics

    R 44 Updated Mar 13, 2017
  • ♋️ Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

    R 30 Updated Mar 13, 2017
  • vcf2maf

    Forked from mskcc/vcf2maf

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 55 Updated Mar 10, 2017
  • SRA Tools

    Shell 57 Updated Sep 30, 2016
  • Visualize regulatory interactions in the side panel of PathVisio

    Java 1 Updated Dec 18, 2015
  • Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

    Python 4 Updated Jul 31, 2015
  • my firsr remote app

    Updated Mar 4, 2015
  • docs

    Forked from linode/docs

    Linode guides and tutorials.

    Shell 542 Updated Oct 15, 2014
  • This project has been superceeded by an official Bootstrap Sass port. Please use:

    CSS 49,706 Updated Apr 11, 2014
  • Cytoscape 3 Clustering App

    Java 6 Updated Mar 6, 2014
  • Parent project for all Cytoscape 3 Sub-projects.

    Shell 42 Updated Dec 11, 2013
  • The OpenBEL Framework Cytoscape Plugins project enables Cytoscape to access and analyze Knowledge Assembly Models.

    Java 4 Updated Aug 24, 2013
  • Cytoscape 2.x series code.

    Java 2 Updated May 10, 2013
  • Spreadsheet storage class in Ruby with Excel-style API

    Ruby 9 Updated May 10, 2013
  • SQL Server Adapter For Rails

    Ruby 391 Updated Nov 7, 2012
  • A Ruby gem to handle FASTQ files

    Ruby 1 Updated Jul 2, 2012
  • A 3'-end adapter contaminant trimmer

    C 25 Updated Jun 1, 2012
  • A barcode demultiplexing and trimming tool for FastQ files

    C 7 Updated May 30, 2012
  • Quick Read Quality Control

    R 6 Updated May 30, 2012
  • jruby

    Forked from jruby/jruby

    JRuby, an implementation of Ruby on the JVM

    Ruby 1 738 Updated May 28, 2012
  • Converter for Illumina Casava v1.7

    1 Updated May 14, 2012
  • My fork of the official Biopython repository, used for experimental branches etc

    Python 1 588 Updated May 9, 2012
  • TMAP

    Forked from iontorrent/TMAP

    Torrent Mapping Alignment Program

    C 1 15 Updated Apr 26, 2012
  • shoes

    Forked from shoes/shoes

    a tiny graphical app kit for ruby

    C 1 191 Updated Mar 27, 2012
  • This plugins is intended to wrap the common software used for Next Generation Sequencing data

    Ruby 1 12 Updated Mar 23, 2012
  • bioruby

    Ruby 1 111 Updated Mar 22, 2012
  • BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package

    Ruby 1 5 Updated Mar 20, 2012
  • Forms made easy for Rails! It's tied to a simple DSL, with no opinion on markup.

    Ruby 1 1,067 Updated Mar 17, 2012
  • Short read de novo assembler using de Bruijn graphs

    C 1 65 Updated Mar 12, 2012
  • sickle

    Forked from najoshi/sickle

    Windowed Adaptive Trimming for fastq files using quality

    C 54 Updated Mar 9, 2012