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@abcsFrederick

abcsFrederick

Popular repositories

  1. NGS Pipelines for Preprocessing RNA-seq, Whole Genome Sequencing and Exome-seq, and miRNA-Seq Data

    Python 7 1

  2. Genome Structural Variants Detection and Annotation Pipelines. Functions include NGS data QC, both germline and somatic SVs and CNVs detections, SVs and CNVs annotation and visualization.

    Python 5 1

  3. R for Reproducible Scientific Analysis

    R 3

  4. Single Cell RNA-seq Analysis Pipeline

    R 2

  5. overlays Public

    Girder plugin for creating and displaying image overlays.

    JavaScript 2

  6. python3 version SlideSeg

    Python 2

Repositories

  • miqa Public

    A Medical Imaging Quality Assurance tool

    Jupyter Notebook 0 Apache-2.0 8 0 0 Updated Oct 31, 2022
  • rms_infer_web Public

    girder3-based inference for RMS models (segmentation,MYOD1 mutation, survivability)

    Python 0 Apache-2.0 1 0 0 Updated Oct 25, 2022
  • NCIAuth Public
    Python 0 1 0 0 Updated Oct 24, 2022
  • SSR_task Public

    Tasks on SSR platform

    Python 0 0 0 0 Updated Sep 13, 2022
  • R 0 0 0 0 Updated Sep 6, 2022
  • RNAScope Public

    Girder plugin for visualization and quantification of viral infections probed with RNAScope

    Python 0 0 0 0 Updated Aug 16, 2022
  • Archive Public
    Python 0 0 0 0 Updated Aug 15, 2022
  • slurm Public

    Girder plugin for slurm connection

    Python 0 0 0 0 Updated Aug 10, 2022
  • glance Public

    Kitware Glance is an open-source web application developed at Kitware for visualizing volumetric images, molecular structures, geometric objects, and point clouds. It is part of the ParaView platform and can serve as a foundation for building custom web-based visualization applications involving ITK.js and VTK.js.

    JavaScript 0 BSD-3-Clause 66 0 0 Updated Jun 1, 2022
  • dwv Public

    DICOM Web Viewer: open source zero footprint medical image library.

    JavaScript 0 GPL-3.0 556 0 0 Updated Apr 11, 2022

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