[M::mm_idx_gen::36.766*1.57] collected minimizers
[M::mm_idx_gen::41.832*1.84] sorted minimizers
[M::main::41.832*1.84] loaded/built the index for 1301 target sequence(s)
[M::mm_mapopt_update::44.288*1.79] mid_occ = 1030
[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 1301
[M::mm_idx_stat::45.322*1.77] distinct minimizers: 72989823 (81.89% are singletons); average occurrences: 2.991; average spacing: 10.069
[M::worker_pipeline::134.878*3.20] mapped 357985 sequences
[M::worker_pipeline::243.424*3.56] mapped 423384 sequences
[M::worker_pipeline::277.127*3.57] mapped 123177 sequences
[M::main] Version: 2.11-r797
[M::main] CMD: /home/blostein/.conda/envs/meta_assembly/lib/python3.6/site-packages/quast_libs/minimap2/minimap2 -c -x asm10 -B5 -O4,16 --no-long-join -r 85 -N 100 -s 65 -z 200 --mask-level 1 --min-occ 200 -g 2500 --score-N 2 --cs -t 4 /gpfs/accounts/bfoxman_root/bfoxman/blostein/meta_CAVITIES/Files/newPipeline/MegahitQuastResults/quast_corrected_input/combined_reference.fasta /gpfs/accounts/bfoxman_root/bfoxman/blostein/meta_CAVITIES/Files/newPipeline/MegahitQuastResults/combined_reference_fragmented/../quast_corrected_input/megahitlarge_f.fa
[M::main] Real time: 277.707 sec; CPU: 991.259 sec