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metaspades error code -11 #333

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hjruscheweyh opened this issue Jul 11, 2019 · 0 comments
Open

metaspades error code -11 #333

hjruscheweyh opened this issue Jul 11, 2019 · 0 comments

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@hjruscheweyh
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Hi!

One of my metapades runs is currently failing with the error -11. I have tried different versions of spades (3.12 binary, 3.12 from conda and 3.13. binary) but it always fails at the exact same spot:

 35:57:01.233   230G / 654G  INFO    General                 (sequence_mapper_notifier.h:  80)   Processed 4200000 reads


== Error ==  system call for: "['SPAdes-3.13.0-Linux/bin/spades-core', 'spades/K55/configs/config.info', 'spades/K55/configs/mda_mode.info', 'spades/K55/configs/meta_mode.info']" finished abnormally, err code: -11

Have you seen the problem before? All my other assemblies (>100) finish without an error with the 3.12. version I have installed.

Thanks a lot,
Hans

params.txt
spades.log

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