diff --git a/minecode/collectors/conda.py b/minecode/collectors/conda.py new file mode 100644 index 00000000..17634263 --- /dev/null +++ b/minecode/collectors/conda.py @@ -0,0 +1,90 @@ +# +# Copyright (c) nexB Inc. and others. All rights reserved. +# purldb is a trademark of nexB Inc. +# SPDX-License-Identifier: Apache-2.0 +# See http://www.apache.org/licenses/LICENSE-2.0 +# See https://github.com/aboutcode-org/purldb for support or download. +# See https://aboutcode.org for more information about nexB OSS projects. +# + +import logging +from urllib.parse import urljoin + +import requests +from packageurl import PackageURL +from minecode import priority_router +from minecode.miners.conda import build_packages +from minecode.utils import fetch_http, get_temp_file +from packagedb.models import PackageContentType +from packageurl.contrib.purl2url import build_conda_download_url + +logger = logging.getLogger(__name__) +handler = logging.StreamHandler() +logger.addHandler(handler) +logger.setLevel(logging.INFO) + + +def map_conda_package(package_url, pipelines, priority=0): + """ + Add a Conda distribution `package_url` to the PackageDB. + """ + from minecode.model_utils import add_package_to_scan_queue + from minecode.model_utils import merge_or_create_package + + download_url = build_conda_download_url(str(package_url)) + if not download_url: + return None + + package_identifier = download_url.split("/")[-1] + package_indexes_url = urljoin(download_url, "./repodata.json.bz2") + + content = fetch_http(package_indexes_url) + location = get_temp_file("NonPersistentHttpVisitor") + with open(location, "wb") as tmp: + tmp.write(content) + + package_info = None + if package_url.namespace == "conda-forge": + package_info = get_package_info(package_url.name) + packages = build_packages(location, download_url, package_info, package_identifier, package_url) + + error = None + for package in packages: + package.extra_data["package_content"] = PackageContentType.SOURCE_ARCHIVE + db_package, _, _, error = merge_or_create_package(package, visit_level=0) + if error: + break + + if db_package: + add_package_to_scan_queue(package=db_package, pipelines=pipelines, priority=priority) + + return error + + +def get_package_info(name): + url = f"https://api.anaconda.org/package/conda-forge/{name}" + try: + response = requests.get(url) + response.raise_for_status() + return response.json() + except requests.exceptions.HTTPError as err: + logger.error(f"HTTP error occurred: {err}") + return None + + +@priority_router.route("pkg:conda/.*") +def process_request(purl_str, **kwargs): + """ + Process Conda Package URL (PURL). + """ + from minecode.model_utils import DEFAULT_PIPELINES + + addon_pipelines = kwargs.get("addon_pipelines", []) + pipelines = DEFAULT_PIPELINES + tuple(addon_pipelines) + priority = kwargs.get("priority", 0) + + package_url = PackageURL.from_string(purl_str) + error_msg = map_conda_package(package_url, pipelines, priority) + + if error_msg: + return error_msg diff --git a/minecode/miners/conda.py b/minecode/miners/conda.py new file mode 100644 index 00000000..38ecbc4e --- /dev/null +++ b/minecode/miners/conda.py @@ -0,0 +1,81 @@ +# +# Copyright (c) nexB Inc. and others. All rights reserved. +# purldb is a trademark of nexB Inc. +# SPDX-License-Identifier: Apache-2.0 +# See http://www.apache.org/licenses/LICENSE-2.0 for the license text. +# See https://github.com/aboutcode-org/purldb for support or download. +# See https://aboutcode.org for more information about nexB OSS projects. +# + +import bz2 +import json +import packagedcode.models as scan_models +from packageurl import PackageURL + + +def build_packages(location, download_url, package_info, package_identifier, package_url): + """ + Yield ScannedPackage built from Conda API. + """ + with bz2.open(location, "rt") as f: + repodata = json.load(f) + + metadata_dict = repodata["packages"].get(package_identifier) + if package_identifier.endswith(".conda"): + metadata_dict = repodata["packages.conda"].get(package_identifier) + + if not metadata_dict: + return + + download_data = dict( + datasource_id="conda_api_metadata", + type="conda", + download_url=download_url, + ) + + extracted_license_statement = [] + license = metadata_dict.get("license") + if license: + extracted_license_statement.append(license) + + dependencies = [] + for dep in metadata_dict.get("depends", []): + parts = dep.split() + name = parts[0] + + dep_purl = PackageURL(type="conan", name=name) + dep = scan_models.DependentPackage(purl=dep_purl.to_string()) + dependencies.append(dep) + + common_data = dict( + name=package_url.name, + namespace=package_url.namespace, + version=package_url.version, + sha256=metadata_dict.get("sha256"), + md5=metadata_dict.get("md5"), + size=metadata_dict.get("size"), + extracted_license_statement=extracted_license_statement, + dependencies=dependencies, + ) + + if package_url.namespace == "conda-forge" and package_info: + description = package_info.get("description") or package_info.get("summary") + html_url = package_info.get("html_url") + dev_url = package_info.get("dev_url") + + license_conda_forge = package_info.get("license") + if license_conda_forge: + common_data["extracted_license_statement"].append(license_conda_forge) + + conda_forge_data = dict( + description=description, + homepage_url=html_url, + repository_homepage_url=dev_url, + ) + + download_data.update(conda_forge_data) + + download_data.update(common_data) + package = scan_models.PackageData.from_data(download_data) + package.set_purl(package_url) + yield package diff --git a/minecode/tests/collectors/test_conda.py b/minecode/tests/collectors/test_conda.py new file mode 100644 index 00000000..a1aeeebb --- /dev/null +++ b/minecode/tests/collectors/test_conda.py @@ -0,0 +1,41 @@ +# +# Copyright (c) nexB Inc. and others. All rights reserved. +# purldb is a trademark of nexB Inc. +# SPDX-License-Identifier: Apache-2.0 +# See http://www.apache.org/licenses/LICENSE-2.0 for the license text. +# See https://github.com/aboutcode-org/purldb for support or download. +# See https://aboutcode.org for more information about nexB OSS projects. +# + +import os +from django.test import TestCase +from packageurl import PackageURL +import packagedb +from minecode.collectors import conda +from minecode.utils_test import JsonBasedTesting + + +class CondaPriorityQueueTests(JsonBasedTesting, TestCase): + test_data_dir = os.path.join(os.path.dirname(os.path.dirname(__file__)), "testfiles") + + def setUp(self): + super().setUp() + self.package_url = PackageURL.from_string( + "pkg:conda/numpy@1.11.3?subdir=linux-64&build=py27h1b885b7_8&type=tar.bz2" + ) + self.download_url = ( + "https://repo.anaconda.com/pkgs/main/linux-64/numpy-1.11.3-py27h1b885b7_8.tar.bz2" + ) + + def test_map_conda_package(self): + package_count = packagedb.models.Package.objects.all().count() + self.assertEqual(package_count, 0) + + conda.map_conda_package(self.package_url, ("test_pipelines")) + package_count = packagedb.models.Package.objects.all().count() + self.assertEqual(package_count, 1) + package = packagedb.models.Package.objects.all().first() + expected_conda_download_url = self.download_url + + self.assertEqual(package.purl, str(self.package_url)) + self.assertEqual(package.download_url, expected_conda_download_url) diff --git a/minecode/tests/miners/test_conda.py b/minecode/tests/miners/test_conda.py new file mode 100644 index 00000000..ac98c01a --- /dev/null +++ b/minecode/tests/miners/test_conda.py @@ -0,0 +1,58 @@ +# +# Copyright (c) nexB Inc. and others. All rights reserved. +# purldb is a trademark of nexB Inc. +# SPDX-License-Identifier: Apache-2.0 +# See http://www.apache.org/licenses/LICENSE-2.0 for the license text. +# See https://github.com/aboutcode-org/purldb for support or download. +# See https://aboutcode.org for more information about nexB OSS projects. +# +import json +import os +from packageurl import PackageURL +from minecode.miners import conda +from minecode.tests import FIXTURES_REGEN +from minecode.utils_test import JsonBasedTesting +from django.test import TestCase as DjangoTestCase + + +class CondaMapperTest(JsonBasedTesting, DjangoTestCase): + test_data_dir = os.path.join(os.path.dirname(os.path.dirname(__file__)), "testfiles") + + def test_build_packages_metafile_conda1(self): + package_url1 = PackageURL.from_string( + "pkg:conda/numpy@1.11.3?subdir=linux-64&build=py27h1b885b7_8&type=conda" + ) + package_identifier1 = "numpy-1.11.3-py27h1b885b7_8.conda" + package_info1 = None + download_url1 = ( + "https://repo.anaconda.com/pkgs/main/linux-64/numpy-1.11.3-py27h1b885b7_8.conda" + ) + location1 = self.get_test_loc("conda/repodata.json.bz2") + + result = conda.build_packages( + location1, download_url1, package_info1, package_identifier1, package_url1 + ) + result = [p.to_dict() for p in result] + expected_loc = self.get_test_loc("conda/mapper_numpy_expected.json") + self.check_expected_results(result, expected_loc, regen=FIXTURES_REGEN) + + def test_build_packages_metafile_conda2(self): + package_url2 = PackageURL.from_string( + "pkg:conda/conda-forge/sqlalchemy@1.1.13?subdir=linux-64&build=py27hb0a01da_0&type=tar.bz2" + ) + package_identifier2 = "sqlalchemy-1.1.13-py27hb0a01da_0.tar.bz2" + + with open(self.get_test_loc("conda/package_info_sqlalchemy.json")) as f: + package_info2 = json.load(f) + + download_url2 = ( + "https://repo.anaconda.com/pkgs/main/linux-64/sqlalchemy-1.1.13-py27hb0a01da_0.tar.bz2" + ) + location2 = self.get_test_loc("conda/repodata.json.bz2") + + result = conda.build_packages( + location2, download_url2, package_info2, package_identifier2, package_url2 + ) + result = [p.to_dict() for p in result] + expected_loc = self.get_test_loc("conda/mapper_sqlalchemy_expected.json") + self.check_expected_results(result, expected_loc, regen=FIXTURES_REGEN) diff --git a/minecode/tests/testfiles/conda/mapper_numpy_expected.json b/minecode/tests/testfiles/conda/mapper_numpy_expected.json new file mode 100644 index 00000000..5a7643cc --- /dev/null +++ b/minecode/tests/testfiles/conda/mapper_numpy_expected.json @@ -0,0 +1,118 @@ +[ + { + "api_data_url": null, + "bug_tracking_url": null, + "code_view_url": null, + "copyright": null, + "datasource_id": "conda_api_metadata", + "declared_license_expression": "bsd-new", + "declared_license_expression_spdx": "BSD-3-Clause", + "dependencies": [ + { + "extra_data": {}, + "extracted_requirement": null, + "is_direct": true, + "is_optional": false, + "is_pinned": false, + "is_runtime": true, + "purl": 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