diff --git a/docs/command-line-interface.rst b/docs/command-line-interface.rst
index ebacc387d3..6ea5bcc72b 100644
--- a/docs/command-line-interface.rst
+++ b/docs/command-line-interface.rst
@@ -145,6 +145,7 @@ Optional arguments:
 - ``--no-global-webhook`` Skip the creation of the global webhook. This option is
   only useful if a global webhook is defined in the settings.
 
+
 .. _cli_batch_create:
 
 `$ scanpipe batch-create [--input-directory INPUT_DIRECTORY] [--input-list FILENAME.csv]`
@@ -532,6 +533,7 @@ Displays status information about the ``PROJECT`` project.
     The full logs of each pipeline execution are displayed by default.
     This can be disabled providing the ``--verbosity 0`` option.
 
+
 .. _cli_output:
 
 `$ scanpipe output --project PROJECT --format {json,csv,xlsx,spdx,cyclonedx,attribution,...}`
@@ -557,6 +559,7 @@ your outputs on the host machine when running with Docker.
 .. tip:: To specify a CycloneDX spec version (default to latest), use the syntax
   ``cyclonedx:VERSION`` as format value. For example: ``--format cyclonedx:1.5``.
 
+
 .. _cli_report:
 
 `$ scanpipe report --model MODEL`
@@ -598,6 +601,7 @@ worksheet::
 
    $ scanpipe report --model package --search audit
 
+
 .. _cli_check_compliance:
 
 `$ scanpipe check-compliance --project PROJECT`
@@ -630,16 +634,41 @@ Optional arguments:
 - ``--no-input`` Does not prompt the user for input of any kind.
 
 
+.. _cli_reset_project:
+
 `$ scanpipe reset-project --project PROJECT`
 --------------------------------------------
 
-Resets a project removing all database entrie and all data on disks except for
-the input/ directory.
+Resets a project removing all database entries and all data on disks except for
+the :guilabel:`input/` directory.
 
 Optional arguments:
 
+- ``--remove-input`` Remove the :guilabel:`input/` directory and input sources when
+  resetting the project.
+- ``--remove-webhook`` Remove webhook subscriptions when resetting the project.
+- ``--restore-pipelines`` Restore all pipelines that were previously existing on the
+  project.
+- ``--execute-now`` Execute the restored pipelines immediately after restoration.
+  Applies only when ``--restore-pipelines`` is provided.
 - ``--no-input`` Does not prompt the user for input of any kind.
 
+Example usage:
+
+1. Reset a project while preserving input files and webhooks (default behavior)::
+
+   $ scanpipe reset-project --project foo
+
+2. Reset a project and remove all data including input files::
+
+   $ scanpipe reset-project --project foo --remove-input
+
+3. Reset a project and restore its original pipelines for re-execution::
+
+   $ scanpipe reset-project --project foo --restore-pipelines --execute-now
+
+
+.. _cli_delete_project:
 
 `$ scanpipe delete-project --project PROJECT`
 ---------------------------------------------
@@ -715,6 +744,7 @@ Optional arguments:
 - ``--admin`` Specifies that the user should be created as an admin user.
 - ``--super`` Specifies that the user should be created as a superuser.
 
+
 .. _cli_run:
 
 `$ run PIPELINE_NAME [PIPELINE_NAME ...] input_location`
diff --git a/scanpipe/api/serializers.py b/scanpipe/api/serializers.py
index 8f8b7a59d7..587a6b411e 100644
--- a/scanpipe/api/serializers.py
+++ b/scanpipe/api/serializers.py
@@ -582,6 +582,12 @@ class ProjectResetSerializer(serializers.Serializer):
         initial=True,
         help_text="Keep the input directory and input sources when resetting.",
     )
+    keep_webhook = serializers.BooleanField(
+        required=False,
+        default=True,
+        initial=True,
+        help_text="Keep webhook subscriptions when resetting.",
+    )
     restore_pipelines = serializers.BooleanField(
         required=False,
         default=False,
diff --git a/scanpipe/forms.py b/scanpipe/forms.py
index cd40b48ee5..e3f93e3af4 100644
--- a/scanpipe/forms.py
+++ b/scanpipe/forms.py
@@ -287,6 +287,11 @@ class ProjectResetForm(BaseProjectActionForm):
         initial=True,
         required=False,
     )
+    keep_webhook = forms.BooleanField(
+        label="Keep webhook subscriptions",
+        initial=True,
+        required=False,
+    )
     restore_pipelines = forms.BooleanField(
         label="Restore existing pipelines",
         initial=False,
@@ -301,6 +306,7 @@ class ProjectResetForm(BaseProjectActionForm):
     def get_action_kwargs(self):
         return {
             "keep_input": self.cleaned_data["keep_input"],
+            "keep_webhook": self.cleaned_data["keep_webhook"],
             "restore_pipelines": self.cleaned_data["restore_pipelines"],
             "execute_now": self.cleaned_data["execute_now"],
         }
diff --git a/scanpipe/management/commands/reset-project.py b/scanpipe/management/commands/reset-project.py
index 47b6e28b55..19e4b83010 100644
--- a/scanpipe/management/commands/reset-project.py
+++ b/scanpipe/management/commands/reset-project.py
@@ -22,7 +22,10 @@
 
 import sys
 
+from django.core.management import CommandError
+
 from scanpipe.management.commands import ProjectCommand
+from scanpipe.models import RunInProgressError
 
 
 class Command(ProjectCommand):
@@ -39,6 +42,26 @@ def add_arguments(self, parser):
             dest="interactive",
             help="Do not prompt the user for input of any kind.",
         )
+        parser.add_argument(
+            "--remove-input",
+            action="store_true",
+            help="Remove the input directory and input sources when resetting.",
+        )
+        parser.add_argument(
+            "--remove-webhook",
+            action="store_true",
+            help="Remove webhook subscriptions when resetting.",
+        )
+        parser.add_argument(
+            "--restore-pipelines",
+            action="store_true",
+            help="Restore all pipelines that were previously existing on the project.",
+        )
+        parser.add_argument(
+            "--execute-now",
+            action="store_true",
+            help="Execute the restored pipelines immediately after restoration.",
+        )
 
     def handle(self, *inputs, **options):
         super().handle(*inputs, **options)
@@ -56,11 +79,19 @@ def handle(self, *inputs, **options):
                     self.stdout.write("Reset cancelled.")
                 sys.exit(0)
 
-        self.project.reset(keep_input=True)
+        keep_input = not options["remove_input"]
+        keep_webhook = not options["remove_webhook"]
 
-        if self.verbosity > 0:
-            msg = (
-                f"All data, except inputs, for the {self.project} project have been "
-                f"removed."
+        try:
+            self.project.reset(
+                keep_input=keep_input,
+                keep_webhook=keep_webhook,
+                restore_pipelines=options["restore_pipelines"],
+                execute_now=options["execute_now"],
             )
+        except RunInProgressError as error:
+            raise CommandError(error)
+
+        if self.verbosity > 0:
+            msg = f"The {self.project} project has been reset."
             self.stdout.write(msg, self.style.SUCCESS)
diff --git a/scanpipe/models.py b/scanpipe/models.py
index f12d079957..5ead8c6f01 100644
--- a/scanpipe/models.py
+++ b/scanpipe/models.py
@@ -678,7 +678,9 @@ def archive(self, remove_input=False, remove_codebase=False, remove_output=False
 
         self.update(is_archived=True)
 
-    def delete_related_objects(self, keep_input=False, keep_labels=False):
+    def delete_related_objects(
+        self, keep_input=False, keep_labels=False, keep_webhook=False
+    ):
         """
         Delete all related object instances using the private `_raw_delete` model API.
         This bypass the objects collection, cascade deletions, and signals.
@@ -700,7 +702,6 @@ def delete_related_objects(self, keep_input=False, keep_labels=False):
 
         relationships = [
             self.webhookdeliveries,
-            self.webhooksubscriptions,
             self.projectmessages,
             self.codebaserelations,
             self.discovereddependencies,
@@ -712,6 +713,9 @@ def delete_related_objects(self, keep_input=False, keep_labels=False):
         if not keep_input:
             relationships.append(self.inputsources)
 
+        if not keep_webhook:
+            relationships.append(self.webhooksubscriptions)
+
         for qs in relationships:
             count = qs.all()._raw_delete(qs.db)
             deleted_counter[qs.model._meta.label] = count
@@ -730,10 +734,16 @@ def delete(self, *args, **kwargs):
 
         return super().delete(*args, **kwargs)
 
-    def reset(self, keep_input=True, restore_pipelines=False, execute_now=False):
+    def reset(
+        self,
+        keep_input=True,
+        keep_webhook=True,
+        restore_pipelines=False,
+        execute_now=False,
+    ):
         """
         Reset the project by deleting all related database objects and all work
-        directories except the input directory—when the `keep_input` option is True.
+        directories except the input directory when the `keep_input` option is True.
         """
         self._raise_if_run_in_progress()
 
@@ -748,7 +758,9 @@ def reset(self, keep_input=True, restore_pipelines=False, execute_now=False):
                 for run in self.runs.all()
             ]
 
-        self.delete_related_objects(keep_input=keep_input, keep_labels=True)
+        self.delete_related_objects(
+            keep_input=keep_input, keep_labels=True, keep_webhook=keep_webhook
+        )
 
         work_directories = [
             self.codebase_path,
diff --git a/scanpipe/templates/scanpipe/modals/project_reset_modal.html b/scanpipe/templates/scanpipe/modals/project_reset_modal.html
index 43d07184e0..ade682ca12 100644
--- a/scanpipe/templates/scanpipe/modals/project_reset_modal.html
+++ b/scanpipe/templates/scanpipe/modals/project_reset_modal.html
@@ -21,6 +21,12 @@
             {{ reset_form.keep_input }}
             {{ reset_form.keep_input.label }}
           </label>
+        </div>
+         <div class="field">
+          <label class="label">
+            {{ reset_form.keep_webhook }}
+            {{ reset_form.keep_webhook.label }}
+          </label>
         </div>
         <div class="field">
           <label class="label">
diff --git a/scanpipe/tests/test_commands.py b/scanpipe/tests/test_commands.py
index 5963611f90..d985d4d97b 100644
--- a/scanpipe/tests/test_commands.py
+++ b/scanpipe/tests/test_commands.py
@@ -804,10 +804,12 @@ def test_scanpipe_management_command_reset_project(self):
         project.add_pipeline("analyze_docker_image")
         CodebaseResource.objects.create(project=project, path="filename.ext")
         DiscoveredPackage.objects.create(project=project)
+        project.add_webhook_subscription(target_url="https://localhost")
 
         self.assertEqual(1, project.runs.count())
         self.assertEqual(1, project.codebaseresources.count())
         self.assertEqual(1, project.discoveredpackages.count())
+        self.assertEqual(1, project.webhooksubscriptions.count())
 
         (project.input_path / "input_file").touch()
         (project.codebase_path / "codebase_file").touch()
@@ -823,17 +825,33 @@ def test_scanpipe_management_command_reset_project(self):
         ]
         call_command("reset-project", *options, stdout=out)
         out_value = out.getvalue().strip()
-
-        expected = (
-            "All data, except inputs, for the my_project project have been removed."
-        )
-        self.assertEqual(expected, out_value)
+        self.assertEqual("The my_project project has been reset.", out_value)
 
         self.assertEqual(0, project.runs.count())
         self.assertEqual(0, project.codebaseresources.count())
         self.assertEqual(0, project.discoveredpackages.count())
         self.assertEqual(1, len(Project.get_root_content(project.input_path)))
         self.assertEqual(0, len(Project.get_root_content(project.codebase_path)))
+        self.assertEqual(1, project.webhooksubscriptions.count())
+
+        project.add_pipeline("analyze_docker_image")
+        self.assertEqual(1, project.runs.count())
+        out = StringIO()
+        options += [
+            "--remove-input",
+            "--remove-webhook",
+            "--restore-pipelines",
+        ]
+        call_command("reset-project", *options, stdout=out)
+        out_value = out.getvalue().strip()
+        self.assertEqual("The my_project project has been reset.", out_value)
+
+        self.assertEqual(1, project.runs.count())
+        self.assertEqual(0, project.codebaseresources.count())
+        self.assertEqual(0, project.discoveredpackages.count())
+        self.assertEqual(0, len(Project.get_root_content(project.input_path)))
+        self.assertEqual(0, len(Project.get_root_content(project.codebase_path)))
+        self.assertEqual(0, project.webhooksubscriptions.count())
 
     def test_scanpipe_management_command_flush_projects(self):
         project1 = make_project("project1")
diff --git a/scanpipe/tests/test_models.py b/scanpipe/tests/test_models.py
index affc8c7588..32e033cc85 100644
--- a/scanpipe/tests/test_models.py
+++ b/scanpipe/tests/test_models.py
@@ -227,25 +227,29 @@ def test_scanpipe_project_model_reset(self):
         package = DiscoveredPackage.objects.create(project=self.project1)
         resource.discovered_packages.add(package)
         make_message(self.project1, description="Error")
+        self.project1.add_webhook_subscription(target_url="https://localhost")
 
         self.assertEqual(1, self.project1.projectmessages.count())
         self.assertEqual(1, self.project1.runs.count())
         self.assertEqual(1, self.project1.discoveredpackages.count())
         self.assertEqual(1, self.project1.codebaseresources.count())
         self.assertEqual(1, self.project1.inputsources.count())
+        self.assertEqual(1, self.project1.webhooksubscriptions.count())
 
         self.project1.reset(restore_pipelines=True, execute_now=False)
         self.assertEqual(0, self.project1.projectmessages.count())
         self.assertEqual(1, self.project1.runs.count())
         self.assertEqual(0, self.project1.discoveredpackages.count())
         self.assertEqual(0, self.project1.codebaseresources.count())
+        self.assertEqual(1, self.project1.webhooksubscriptions.count())
 
-        self.project1.reset()
+        self.project1.reset(keep_webhook=False)
         self.assertTrue(Project.objects.filter(name=self.project1.name).exists())
         self.assertEqual(0, self.project1.projectmessages.count())
         self.assertEqual(0, self.project1.runs.count())
         self.assertEqual(0, self.project1.discoveredpackages.count())
         self.assertEqual(0, self.project1.codebaseresources.count())
+        self.assertEqual(0, self.project1.webhooksubscriptions.count())
 
         # The InputSource objects are kept
         self.assertEqual(1, self.project1.inputsources.count())