GBI/ELIXIR/EuBI/NEUBIAS hackathon model case
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images
Dockerfile
Image Processing Introduction.pdf
Introduction to Image Analysis with Python.ipynb
README.md
environment-python3.yml

README.md

How to run the docker image

Let's assume that docker is installed and running in the local machine. Then:

docker pull ac744/model-training

Run the docker image, binding the docker machine port to the local port

docker run -p 8888:8888 ac744/model-training

copy paste the URL that appears on the terminal to access the jupyter notebook.

Introductory image processing on biological images using python.

Binder

  1. Please find the notes which accompany this practical: 'Image Processing Introduction.pdf'.

  2. Using your jupyter (ipython) notebook navigate to: 'Introduction to Image Analysis with Python.ipynb'.

    This practical is based on introducing the jupyter notebook software for image processing and analysis. Allow around 1 h for this.