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README

README

Bioconductor images

Based on rocker/r-ver, with additional dependencies installed.
Alternatively, bioconductor/release_core2 is a good base image option.



See also:

- Bioconductor release notes
  https://bioconductor.org/news/bioc_3_8_release/
- rocker Dockerfile
  https://github.com/rocker-org/rocker/blob/master/r-base/Dockerfile
- rstudio Dockerfile
  https://hub.docker.com/r/rocker/rstudio/dockerfile
- Bioconductor Dockerfile
  https://github.com/Bioconductor/bioc_docker/blob/master/out/release_base/Dockerfile



Consider adding:

- AnnotationHub
- DelayedArray
- GenomicRanges
- IRanges
- ensembldb



libcurl4 conflict:

- magick > libcurl4-openssl-dev
- git2r > libgit2-dev > libcurl4-gnutls-dev

The version of libgit2-dev is too old for git2r anyway.
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