From a20a47096138a89a4e419db4bc88e1ba8363de4a Mon Sep 17 00:00:00 2001 From: Michael Steinbaugh Date: Mon, 16 Jul 2018 18:32:58 -0400 Subject: [PATCH] Update NAMESPACE --- DESCRIPTION | 1 + NAMESPACE | 2 ++ R/basejump-package.R | 1 + 3 files changed, 4 insertions(+) diff --git a/DESCRIPTION b/DESCRIPTION index e06f124a4..2f224070f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -49,6 +49,7 @@ Imports: cowplot (>= 0.9), dplyr (>= 0.7), ensembldb, + GenomicFeatures, GenomeInfoDb, GenomicRanges, ggplot2 (>= 3.0), diff --git a/NAMESPACE b/NAMESPACE index da5c5bc2f..e45540981 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -179,6 +179,8 @@ importFrom(Biobase,sampleNames) importFrom(BiocGenerics,counts) importFrom(BiocGenerics,match) importFrom(GenomeInfoDb,seqnames) +importFrom(GenomicFeatures,genes) +importFrom(GenomicFeatures,transcripts) importFrom(GenomicRanges,GRanges) importFrom(IRanges,IRanges) importFrom(Matrix,Matrix) diff --git a/R/basejump-package.R b/R/basejump-package.R index 917b6b42a..d75b4d4df 100644 --- a/R/basejump-package.R +++ b/R/basejump-package.R @@ -34,6 +34,7 @@ #' mutate_all mutate_at mutate_if select starts_with summarize_all top_n #' ungroup #' @importFrom ensembldb ensemblVersion organism +#' @importFrom GenomicFeatures genes transcripts #' @importFrom GenomicRanges GRanges #' @importFrom ggplot2 element_blank element_line element_rect element_text #' theme theme_linedraw