INFO:    Converting SIF file to temporary sandbox...
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

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    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
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Attaching package: 'S4Vectors'

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Loading required package: IRanges
Loading required package: GenomicRanges
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Loading required package: MatrixGenerics
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Attaching package: 'MatrixGenerics'

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    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
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    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
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    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
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    rowWeightedSds, rowWeightedVars

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

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Attaching package: 'plyr'

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Loading required package: EnhancedVolcano
Loading required package: ggrepel
converting counts to integer mode
estimating size factors
estimating dispersions
gene-wise dispersion estimates
mean-dispersion relationship
final dispersion estimates
fitting model and testing
Error in cleanContrast(object, contrast, expanded = isExpanded, listValues = listValues,  : 
  as EFF is the reference level, was expecting group_Inf_vs_EFF to be present in 'resultsNames(object)'
Calls: lapply ... lapply -> FUN -> lfcShrink -> results -> cleanContrast
Execution halted
INFO:    Cleaning up image...