sample	file1	file2	group	rep_no
CAM-Eff	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/CAM-Eff_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/CAM-Eff_R2_001.fastq.gz	EFF	1
CAM-Inf	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/CAM-Inf_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/CAM-Inf_R2_001.fastq.gz	INF	1
GHA-Eff	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/GHA-Eff_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/GHA-Eff_R2_001.fastq.gz	EFF	2
GHA-Inf	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/GHA-Inf_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/GHA-Inf_R2_001.fastq.gz	INF	2
KEN-Eff	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/KEN-Eff_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/KEN-Eff_R2_001.fastq.gz	EFF	3
KEN-Inf	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/KEN-Inf_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/KEN-Inf_R2_001.fastq.gz	INF	3
NIG-Eff	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/NIG-Eff_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/NIG-Eff_R2_001.fastq.gz	EFF	4
NIG-Inf	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/NIG-Inf_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/NIG-Inf_R2_001.fastq.gz	INF	4
SAF-Eff	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/SAF-Eff_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/SAF-Eff_R2_001.fastq.gz	EFF	5
SAF-Inf	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/SAF-Inf_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/SAF-Inf_R2_001.fastq.gz	INF	5
UGA-Eff	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/UGA-Eff_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/UGA-Eff_R2_001.fastq.gz	EFF	6
UGA-Inf	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/UGA-Inf_R1_001.fastq.gz	/scratch/sysuser/jonathan/ops/MRC/DE_RNA/UGA-Inf_R2_001.fastq.gz	INF	6