Visualisation of Epistasis in Cytoscape using a Python API.
These instructions will get you a copy of the project up and running on your local machine for development and testing purposes.
Python3.6 or above
pip install pandas
- py2cytoscape - A collection of utilities that enables one to use Cytoscape using Python
- Cytoscape - Platform used for visualisation
A step by step series of instructions that tell you how to get the development env running
Clone this repository upon installation of the above prerequisites. Open Cytoscape and have it running in the background. Then open the command prompt/ terminal and navigate to the folder where the program is by typing the following command.
Then in order to run the program make sure to give a .csv file as the input to the command line argument -i as shown below.
python ./main.py -i out1.Alpha.4.csv
Then Python will automatically provide you with the Cytoscape visualisation of the content in the file provided.
- Milindi Kodikara
See also the list of contributors who participated in this project.
- Arash Bayat