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	3DEdge
	R_scripts
	SUMA
	XmHTML
	avovk
	coxplot
	crorden
	dlcompat
	eispack
	f2cdir
	faces
	gifsicledir
	gifti
	html
	jpeg-6b
	jzosky
	maple
	matlab
	mpeg_encodedir
	mpegtoppm_dir
	netcdf-3.5.0/src
	nifti
	niml
	other_builds
	pkundu
	poems
	ptaylor
	python_scripts
	qhulldir
	rhammett
	rickr
	rwcox
	scripts_install
	scripts_src
	shiny
	.gitignore
	1dAstrip.c
	1dBandpass.c
	1dBport.c
	1dCorrelate.c
	1dFlagMotion.c
	1dGentimes.c
	1dMarry.c
	1dNLfit.c
	1dREMLfit.c
	1dSEM.c
	1dTsort.c
	1dUpsample.c
	1dcat.c
	1dcorr.c
	1ddot.c
	1deval.c
	1dfft.c
	1dftime.c
	1dgenARMA11.c
	1dgrayplot.c
	1dmatcalc.c
	1dnorm.c
	1dplot.c
	1dsigplot.c
	1dsum.c
	1dsvd.c
	1dtranspose.c
	24swap.c
	2dImReg.c
	2perm.c
	2swap.c
	2tocx.c
	3T_toafni.c
	3dABoverlap.c
	3dAFNIto3D.c
	3dAFNItoANALYZE.c
	3dAFNItoMINC.c
	3dAFNItoNIFTI.c
	3dAFNItoNIML.c
	3dAFNItoRaw.c
	3dANALYZEtoAFNI.c
	3dANOVA.c
	3dANOVA.h
	3dANOVA.lib
	3dANOVA2.c
	3dANOVA3.c
	3dAcost.c
	3dAllineate.c
	3dAnatNudge.c
	3dAnhist.c
	3dAttribute.c
	3dAutoTcorrelate.c
	3dAutobox.c
	3dAutomask.c
	3dBandpass.c
	3dBlurInMask.c
	3dBlurToFWHM.c
	3dBrainSync.c
	3dBrickStat.c
	3dCM.c
	3dClipLevel.c
	3dClustCount.c
	3dClustSim.c
	3dConformist.c
	3dConvolve.c
	3dCountSpikes.c
	3dDFT.c
	3dDTeig.c
	3dDTtoDWI.c
	3dDWItoDT.c
	3dDeconvolve.c
	3dDeghost.c
	3dDegreeCentrality.c
	3dDespike.c
	3dDetrend.c
	3dDimRed.c
	3dDimize.c
	3dECM.c
	3dETC.c
	3dEmpty.c
	3dEntropy.c
	3dErrtsCormat.c
	3dExtractGroupInCorr.c
	3dExtrema.c
	3dFDR.c
	3dFFT.c
	3dFWHM.c
	3dFWHMx.c
	3dFourier.c
	3dFriedman.c
	3dGetrow.c
	3dGroupInCorr.c
	3dHmetric.c
	3dIntracranial.c
	3dInvFMRI.c
	3dJointHist.c
	3dKruskalWallis.c
	3dLFCD.c
	3dLRflip.c
	3dLSS.c
	3dLocalACF.c
	3dLocalBistat.c
	3dLocalCormat.c
	3dLocalHistog.c
	3dLocalPV.c
	3dLocalSVD.c
	3dLocalstat.c
	3dMINCtoAFNI.c
	3dMSE.c
	3dMannWhitney.c
	3dMaskToASCII.c
	3dMean.c
	3dMedianFilter.c
	3dMultiThresh.c
	3dNLfim.c
	3dNeocon.c
	3dNormalityTest.c
	3dNormalizer.c
	3dNotes.c
	3dNwarpAdjust.c
	3dNwarpApply.c
	3dNwarpCalc.c
	3dNwarpCat.c
	3dNwarpFuncs.c
	3dNwarpXYZ.c
	3dOverlap.c
	3dPeriodogram.c
	3dPolyfit.c
	3dPval.c
	3dQwarp.c
	3dRBFdset.c
	3dREMLfit.c
	3dROIstats.c
	3dRank.c
	3dRankizer.c
	3dRegAna.c
	3dRetinoPhase.c
	3dRowFillin.c
	3dSatCheck.c
	3dSegment.c
	3dSetupGroupInCorr.c
	3dSharpen.c
	3dSimARMA11.c
	3dSpatNorm.c
	3dStatClust.c
	3dSynthesize.c
	3dTRfix.c
	3dTSgen.c
	3dTagalign.c
	3dTcat.c
	3dTcorr1D.c
	3dTcorrMap.c
	3dTcorrelate.c
	3dTfilter.c
	3dTfitter.c
	3dThreetoRGB.c
	3dTnorm.c
	3dToutcount.c
	3dToyProg.c
	3dTproject.c
	3dTqual.c
	3dTransformGroupInCorr.c
	3dTshift.c
	3dTsmooth.c
	3dTsmoothR.c
	3dTsort.c
	3dTsplit4D.c
	3dTstat.c
	3dTwotoComplex.c
	3dUndump.c
	3dUnifize.c
	3dUniformize.c
	3dUpsample.c
	3dWarp.c
	3dWarpDrive.c
	3dWavelets.c
	3dWilcoxon.c
	3dWinsor.c
	3dXClustSim.c
	3dXYZcat.c
	3dZFillin.c
	3dZcat.c
	3dZcutup.c
	3dZeropad.c
	3dZregrid.c
	3danisosmooth.c
	3daxialize.c
	3dbetafit.c
	3dbetafit2.c
	3dbetafit3.c
	3dbuc2fim.c
	3dbucket.c
	3dcalc.c
	3dclust.c
	3dcopy.c
	3ddata.h
	3ddelay.c
	3ddot.c
	3ddup.c
	3dedge.c
	3dedge3.c
	3destpdf.c
	3dexample1.c
	3dfim+.c
	3dfim.c
	3dfractionize.c
	3dhclip.c
	3dhistog.c
	3dinfo.c
	3dinfo_OLD.c
	3dmaskSVD.c
	3dmask_tool.c
	3dmaskave.c
	3dmaskdump.c
	3dmatcalc.c
	3dmatmult.c
	3dmaxima.c
	3dmerge.c
	3dnewid.c
	3dnoise.c
	3dnvals.c
	3dpc.c
	3dproject.c
	3drefit.c
	3drename.c
	3dretroicor.c
	3drotate.c
	3dstrip.c
	3dsvm_linpredict.c
	3dtoXdataset.c
	3dttest++.c
	3dttest.c
	3duca.c
	3duuu.c
	3duuu2.c
	3dvolreg.c
	4swap.c
	@3dSeg
	@CalculateSignatures
	@CodeLc
	@RegroupLabels
	@RmakeOpts
	@Test_disk_IO
	@banded_clustsim
	@pnmtopng
	AFNI.Xdefaults
	AFNI.afnirc
	AFNI.changes.dglen
	AFNI.sumarc
	AFNI_atlas_spaces.niml
	AFNI_digest_history.txt
	AFNI_embeddedRCall.c
	AFNI_embeddedRCall.h
	AFNI_label.h
	AFNI_version_base.txt
	AlphaSim.c
	AlphaTab64.h
	Amalloc.h
	Aomp.h
	DTIStudioFibertoSegments.c
	DWIstructtensor.c
	Daubechies.c
	Deconvolve.c
	FD2.c
	FD2_inc.c
	FIRdesign.c
	GLTsymtest.c
	Haar.c
	Ifile.c
	Intracranial.c
	Intracranial.h
	LiteClue.c
	LiteClue.h
	LiteClueP.h
	Makefile.BSD
	Makefile.BSD_AMD64
	Makefile.FreeBSD
	Makefile.INCLUDE
	Makefile.NIH.CentOS.5.3_64
	Makefile.NIH.openSUSE.11.3_64
	Makefile.NIH.openSUSE.11.4_64
	Makefile.altix_gcc
	Makefile.altix_icc
	Makefile.biowulf_icc
	Makefile.cygwin
	Makefile.darwin
	Makefile.hpux_10.20
	Makefile.linuxPPC
	Makefile.linux_centos_7_64
	Makefile.linux_gcc32
	Makefile.linux_gcc33_64
	Makefile.linux_glibc21
	Makefile.linux_glibc22
	Makefile.linux_ia64
	Makefile.linux_lesstif
	Makefile.linux_openmp
	Makefile.linux_openmp_64
	Makefile.linux_ubuntu_16_64
	Makefile.linux_xorg7
	Makefile.linux_xorg7_64
	Makefile.macosx_10.10_Intel_64
	Makefile.macosx_10.10_icc
	Makefile.macosx_10.2
	Makefile.macosx_10.3
	Makefile.macosx_10.3_G5
	Makefile.macosx_10.3_G5_darwinports
	Makefile.macosx_10.3_darwinports
	Makefile.macosx_10.3_fink
	Makefile.macosx_10.4
	Makefile.macosx_10.4_G5
	Makefile.macosx_10.4_Intel
	Makefile.macosx_10.5_G4
	Makefile.macosx_10.5_G5
	Makefile.macosx_10.5_Intel
	Makefile.macosx_10.5_Intel_64
	Makefile.macosx_10.5_Intel_64icc
	Makefile.macosx_10.6_Intel_64
	Makefile.macosx_10.7_Intel_64
	Makefile.macosx_10.7_local
	Makefile.macosx_10.8_gcc
	Makefile.macosx_10.8_icc
	Makefile.osf1
	Makefile.rs6000
	Makefile.scoudk
	Makefile.sgi10k_6.5
	Makefile.sgi10k_6.5_gcc
	Makefile.solaris26_gcc
	Makefile.solaris27_gcc
	Makefile.solaris28_gcc
	Makefile.solaris28_suncc
	Makefile.solaris29_suncc
	Makefile.solaris29_suncc_64
	Makefile_linux_g++
	Makefile_macosx_g++
	NLfit.c
	NLfit.h
	NLfit_model.c
	NLfit_model.h
	NPstats.c
	PvalueStuff.h
	README.3dsvm.realtime
	RSFgen.c
	RWCox.h
	R_io.c
	RegAna.c
	Simplexx.c
	StatClust.c
	UnwarpEPI.csh
	Vecwarp.c
	Wavelets.c
	Wavelets.h
	Xphace.c
	abut.c
	adwarp.c
	afni.c
	afni.h
	afni16.xbm
	afni200.tex
	afni48.xbm
	afni48axi.xbm
	afni48cor.xbm
	afni48gra.xbm
	afni48graaxi.xbm
	afni48gracor.xbm
	afni48grasag.xbm
	afni48ren.xbm
	afni48sag.xbm
	afni_broutext.h
	afni_broutim.h
	afni_cluster.c
	afni_driver.c
	afni_environ.c
	afni_environ.h
	afni_filer.c
	afni_fimfunc.c
	afni_fimmer.c
	afni_fimmer_compute.c
	afni_friends.c
	afni_func.c
	afni_graph.c
	afni_graph.h
	afni_history.c
	afni_history.h
	afni_history_bpittman.c
	afni_history_christip.c
	afni_history_dglen.c
	afni_history_discoraj.c
	afni_history_gangc.c
	afni_history_ptaylor.c
	afni_history_rickr.c
	afni_history_rwcox.c
	afni_history_ziad.c
	afni_lock.c
	afni_logger.c
	afni_niml.c
	afni_open.c
	afni_papers.h
	afni_papers.txt
	afni_pcor.c
	afni_pcor.h
	afni_pcor_update.c
	afni_plugin.c
	afni_plugin.h
	afni_plugin_CYGWIN.h
	afni_plugins.tex
	afni_plugout.c
	afni_plugout.h
	afni_ports.c
	afni_pplug_1dfunc.c
	afni_pplug_2dfunc.c
	afni_pplug_env.c
	afni_pplug_instacalc.c
	afni_pplug_instacorr.c
	afni_receive.c
	afni_register.tex
	afni_setup.c
	afni_setup.h
	afni_slice.c
	afni_splash.c
	afni_splash.h
	afni_suma.c
	afni_suma.h
	afni_sumafunc.c
	afni_transforms.c
	afni_ttren.c
	afni_vcheck.c
	afni_vedit.c
	afni_version.c
	afni_vol2surf.c
	afni_warp.c
	afni_warp.h
	afni_whelp.c
	afni_whelp.h
	afni_widg.c
	agni_to_afni.c
	aiv.c
	apsearch.c
	aren.c
	aren.h
	arentest.c
	balloon.c
	bbb.c
	bbox.c
	bbox.h
	betafit.c
	bilinear_warp3D.c
	bilinear_warp3D.h
	bitvec.c
	bseq.c
	buckets.tex
	byteorder.c
	bzip2.c
	cat_matvec.c
	ccalc.c
	ccatt.c
	cdf.c
	cl1.c
	cl1.f
	cl2.c
	clamlib.h
	colari.c
	colcalc.c
	colcalc.f
	colfit.c
	colfit.f
	count.c
	covmat.c
	cox_render.c
	cox_render.h
	coxplot.h
	crao.c
	crao2.c
	cs.h
	cs_addto_args.c
	cs_color.c
	cs_fgets.c
	cs_laguerre.c
	cs_misc.c
	cs_pv.c
	cs_qhull.c
	cs_qmed.c
	cs_qsort_small.h
	cs_simult.c
	cs_sort_d.c
	cs_sort_di.c
	cs_sort_dv.c
	cs_sort_ff.c
	cs_sort_fi.c
	cs_sort_fv.c
	cs_sort_ii.c
	cs_sort_iv.c
	cs_sort_template.h
	cs_symeig.c
	cs_symeig23.c
	csfft.c
	csfft_AJ.c
	csfft_OMP.c
	csfft_cache.c
	daemonize.c
	dbtrace.h
	dct8.c
	debugtrace.c
	debugtrace.h
	delay.c
	dicom_hdr.c
	dicom_hinfo.c
	dicom_to_raw.c
	display.c
	display.h
	dmat44.c
	dsetdup.c
	dtime.c
	dyn_array.h
	editvol.h
	edt_addbrick.c
	edt_blur.c
	edt_buildmask.c
	edt_calcmask.c
	edt_checkargv.c
	edt_clust.c
	edt_clust2.c
	edt_clustalpha.c
	edt_clustarr.c
	edt_coerce.c
	edt_dsetitems.c
	edt_emptycopy.c
	edt_filtervol.c
	edt_floatize.c
	edt_fullcopy.c
	edt_geomcon.c
	edt_help.c
	edt_onedset.c
	edt_scl2max.c
	edt_sortmask.c
	edt_substbrick.c
	edt_volamax.c
	edt_volpad.c
	edt_wodcopy.c
	edt_zscore.c
	efence.c
	efence.h
	eispack.h
	ent16.c
	ep_afni.c
	ep_afni.h
	epsim.c
	estpdf.c
	estpdf3.c
	extor.c
	exx.c
	f2c.h
	fdrval.c
	fft3.c
	fftcheck.c
	fftest.c
	fftest_OMP.c
	fftnext.c
	fftprint.c
	fftw.h
	fftw_setup.c
	fim+.c
	fim.c
	fim2.c
	fixed_plugins.h
	flippo.c
	float_scan.c
	fourier_filter.c
	from3d.c
	ftosh.c
	galler.c
	ge4_header.c
	ge4_header.h
	ge_header.c
	gicor.h
	gifti_choice.c
	gitignore.src.txt
	gmovie
	gmovie.ppmap
	grabber.c
	graph_compon.c
	grayer.c
	help_format.c
	hide.c
	huber.c
	ibeta.c
	ibinom.c
	im2niml.c
	im_to_mov.c
	images_equal.c
	imand.c
	imaver.c
	imcalc.c
	imcat.c
	imcutup.c
	imdump.c
	imfft.c
	imfit.c
	img.c
	immask.c
	imnoneg.c
	impdif.c
	impsd.c
	imreg.c
	imrotate.c
	imseq.c
	imseq.h
	imstack.c
	imstat.c
	imswap.c
	imupsam.c
	iotest.c
	jp_afni.c
	jp_afni.h
	killer.h
	kpart.c
	ktaub.c
	license.h
	list_struct.c
	list_struct.h
	lll.h
	logo.h
	machdep.c
	machdep.h
	makewt.c
	mat44_factor.c
	mathh.h
	matrix.c
	matrix.h
	matrix_f.c
	matrix_f.h
	maxima.c
	maxima.h
	mayo_analyze.c
	mayo_analyze.h
	mayo_analyze.txt
	mbig.c
	mcrawl.c
	mcw.c
	mcw.h
	mcw.xbm
	mcw_glob.c
	mcw_glob.h
	mcw_graf.c
	mcw_graf.h
	mcw_malloc.c
	mcw_malloc.h
	mcwfft.c
	misc_math.c
	misc_math.h
	model_beta.c
	model_constant.c
	model_conv_PRF.c
	model_conv_PRF_6.c
	model_conv_PRF_DOG.c
	model_conv_cosine4.c
	model_conv_diffgamma.c
	model_convgamma.c
	model_convgamma2a.c
	model_demri_3.c
	model_diffexp.c
	model_diffusion.c
	model_exp.c
	model_expMEMRI.c
	model_expMEMRI3.c
	model_expr2.c
	model_gammavar.c
	model_linear.c
	model_linplusort.c
	model_michaelis_menton.c
	model_null.c
	model_quadratic.c
	model_sinewave_ap.c
	model_sinewave_apf.c
	model_squarewave_ap.c
	model_squarewave_apf.c
	model_trnglwave_ap.c
	model_trnglwave_apf.c
	model_zero.c
	motiftoy.c
	moveAFNI
	moveup
	mri_2dalign.c
	mri_3dalign.c
	mri_add_name.c
	mri_aff2d.c
	mri_affine.c
	mri_align.c
	mri_allzero.c
	mri_alphasim.c
	mri_blur3d.c
	mri_blur3d_variable.c
	mri_bport.c
	mri_cat2D.c
	mri_catvol.c
	mri_cfft.c
	mri_check.c
	mri_clusterize.c
	mri_colorsetup.c
	mri_complex_arith.c
	mri_copy.c
	mri_counter.c
	mri_coxplot.c
	mri_cut.c
	mri_dicom_elist.h
	mri_dicom_hdr.c
	mri_dicom_hdr.h
	mri_dicom_stuff.c
	mri_dicom_stuff.h
	mri_drawing.c
	mri_dup.c
	mri_edit.c
	mri_entropy16.c
	mri_equal.c
	mri_extract.c
	mri_fdrize.c
	mri_fft_complex.c
	mri_filt_fft.c
	mri_flip3D.c
	mri_flippo.c
	mri_float_func.c
	mri_floatvec.c
	mri_free.c
	mri_fromstring.c
	mri_fwhm.c
	mri_genARMA11.c
	mri_genalign.c
	mri_genalign_util.c
	mri_get_cmass.c
	mri_gwarp.c
	mri_histobyte.c
	mri_histog.c
	mri_histoshort.c
	mri_image.h
	mri_isgray.c
	mri_lsqfit.c
	mri_matrix.c
	mri_max.c
	mri_medianfilter.c
	mri_metrics.c
	mri_nbistats.c
	mri_new.c
	mri_nsize.c
	mri_nstats.c
	mri_nwarp.c
	mri_order.c
	mri_overlay.c
	mri_pc_pursuit.c
	mri_pcvector.c
	mri_percents.c
	mri_polyfit.c
	mri_process_siemens.c
	mri_process_siemens.h
	mri_purger.c
	mri_quantize.c
	mri_radial_random_field.c
	mri_rbfinterp.c
	mri_read.c
	mri_read_dicom.c
	mri_read_mpeg.c
	mri_read_stuff.c
	mri_render.c
	mri_render.h
	mri_rgba_compose.c
	mri_rota.c
	mri_scale.c
	mri_scaled_diff.c
	mri_scalize.c
	mri_sharpen3D.c
	mri_sharpness.c
	mri_shift2D.c
	mri_shifter.c
	mri_sobel.c
	mri_sort.c
	mri_stat_seq.c
	mri_stats.c
	mri_subset.c
	mri_swapbytes.c
	mri_symbolize.c
	mri_thresh.c
	mri_threshX.c
	mri_to_byte.c
	mri_to_complex.c
	mri_to_float.c
	mri_to_fvect.c
	mri_to_imarr.c
	mri_to_mri.c
	mri_to_pval.c
	mri_to_rgb.c
	mri_to_rgba.c
	mri_to_short.c
	mri_transpose.c
	mri_uncat2D.c
	mri_warp.c
	mri_warp3D.c
	mri_warp3D_align.c
	mri_warpfield.c
	mri_warpfield.h
	mri_wf.c
	mri_write.c
	mri_write_analyze.c
	mri_write_angif.c
	mri_zeropad.c
	mrilib.h
	mritopgm.c
	multivector.c
	multivector.h
	mvv.c
	mycat.c
	myget.c
	nct.c
	netcdf.h
	newstuff.h
	ni_test_r
	ni_test_w
	nicat.c
	niccc.c
	nidset.c
	nifti_statlib.c
	nifti_statlib.h
	nih.xbm
	nimel.c
	niml_feedme.c
	nimltest.c
	nisurf.c
	nsize.c
	overfim.c
	overfim.h
	p2t.c
	parser.c
	parser.f
	parser.h
	parser.inc
	parser_int.c
	pbar.c
	pbar.h
	pbar_color_defs.c
	pbardefs.h
	pcmat.c
	pcor.c
	pcor.h
	pdf.c
	pdf.h
	pfit.c
	phace.c
	plug_3Ddump_V2.c
	plug_3ddot.c
	plug_3ddup.c
	plug_4Ddump.c
	plug_L1fit.c
	plug_afnihistory.c
	plug_aslA3D3.c
	plug_betafit.c
	plug_clust.c
	plug_compress.c
	plug_coorder.c
	plug_copy.c
	plug_crender.c
	plug_deconvolve.c
	plug_delay_V2.c
	plug_delay_V2.h
	plug_drawdset.c
	plug_edit.c
	plug_extract.c
	plug_fourier.c
	plug_funcs.c
	plug_hemisub.c
	plug_histog.c
	plug_histog_multi.c
	plug_imreg.c
	plug_lsqfit.c
	plug_maskave.c
	plug_maskcalc.c
	plug_maskcalc.h
	plug_maxima.c
	plug_nlfit.c
	plug_notes.c
	plug_nth_dataset.c
	plug_nudge.c
	plug_null.c
	plug_permtest.c
	plug_power.c
	plug_ppm.c
	plug_realtime.c
	plug_rename.c
	plug_render.c
	plug_reorder.c
	plug_reorder_parseMap.c
	plug_retroicor.c
	plug_roiedit.c
	plug_roiedit.h
	plug_roiedit.hhh
	plug_roiplot.c
	plug_scatplot.c
	plug_second_dataset.c
	plug_stats.c
	plug_stavg.c
	plug_tag.c
	plug_threshold.c
	plug_ttget.c
	plug_vol2surf.c
	plug_volreg.c
	plug_wavelets.c
	plug_zeropad.c
	plugout_drive.c
	plugout_graph.c
	plugout_ijk.c
	plugout_surf.c
	plugout_tt.c
	plugout_tta.c
	powell_int.c
	powell_newuoa.c
	powell_newuoa.f
	ppmtoargb.c
	ppmtocmap.c
	prf_common_circular.c
	prog_list.txt
	prog_opts.c
	qcolor.c
	qft.c
	qmed.c
	qplot.c
	qrot.c
	qsort.c
	qsort.h
	qunrot.c
	quotize.c
	randgen.c
	ranks.c
	rcmat.c
	rcmat.h
	rcov.c
	readme_afnigui.h
	readme_env.h
	realtime.tex
	realtime_callback_example.c
	remez.c
	remez.h
	remla.c
	retroicor.c
	retroicor.h
	rev.c
	rgbyte.c
	rhdd.c
	rhdd.h
	rhdd_warp.c
	rmz.c
	rotcom.c
	rotmat.c
	rtest1.c
	rtfeedme.c
	rwc.xbm
	sfim.c
	siemens_dicom_csa.c
	siemens_vision.c
	siemens_vision.h
	simplex.c
	simplex.h
	sink.c
	slider.c
	sonnets.h
	spanner.c
	sparse_array.c
	sparse_array.h
	splash_blank.h