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ATAC-seq library nucleosome fitting
ATAC-seq library nucleosome fitting
research
atac-seq
python

{% include JB/setup %}

This great iPython notebook on ATAC-seq nucleosome fitting gave me exactly what I needed for ATAC-seq data analysis.

I've added a few more simple features, adapter the fitting parameters to data produced in our lab and created a single function with it, which I will call during ATAC-seq pipeline runs.

Some metrics will be valuable to assess sample quality as well.

{%gist c37c112a6b4e58eb75b0 %}