From 55339d62e1f9a3ee5266f1f0a513479b56bcf36f Mon Sep 17 00:00:00 2001 From: tfguinan <59532990+tfguinan@users.noreply.github.com> Date: Tue, 21 May 2024 15:06:25 +1000 Subject: [PATCH 1/2] Update README.md Add scTEP --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index 1e609ea..40e7006 100644 --- a/README.md +++ b/README.md @@ -1138,3 +1138,9 @@ Manuscript: [Hodge Decomposition of Single-Cell RNA Velocity](https://doi.org/10 ### ConsensusVelo Manuscript: [Quantifying uncertainty in RNA velocity](https://doi.org/10.1101/2024.05.14.594102) + +### scTEP + +Software: https://cran.r-project.org/package=scTEP + +Manuscript: [A robust and accurate single-cell data trajectory inference method using ensemble pseudotime](https://doi.org/10.1186%2Fs12859-023-05179-2) From 2b9f7f266ef7a1bf1ff5f5c5eb1506cbead5e568 Mon Sep 17 00:00:00 2001 From: Anthony Gitter Date: Tue, 21 May 2024 06:48:51 -0500 Subject: [PATCH 2/2] Move scTEP with core pseudotime methods --- README.md | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 40e7006..1c9ae12 100644 --- a/README.md +++ b/README.md @@ -840,7 +840,11 @@ Software: https://github.com/keita-iida/PSEUDOTIMEABC Manuscript: [Identifying key regulatory genes in drug resistance acquisition: Modeling pseudotime trajectories of single-cell transcriptome](https://doi.org/10.1101/2024.04.25.591115) +### scTEP + +Software: https://cran.r-project.org/package=scTEP +Manuscript: [A robust and accurate single-cell data trajectory inference method using ensemble pseudotime](https://doi.org/10.1186/s12859-023-05179-2) @@ -1138,9 +1142,3 @@ Manuscript: [Hodge Decomposition of Single-Cell RNA Velocity](https://doi.org/10 ### ConsensusVelo Manuscript: [Quantifying uncertainty in RNA velocity](https://doi.org/10.1101/2024.05.14.594102) - -### scTEP - -Software: https://cran.r-project.org/package=scTEP - -Manuscript: [A robust and accurate single-cell data trajectory inference method using ensemble pseudotime](https://doi.org/10.1186%2Fs12859-023-05179-2)