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+900 diff --git a/nemreader/nem_reader.py b/nemreader/nem_reader.py index 05c7c5d..cd65652 100644 --- a/nemreader/nem_reader.py +++ b/nemreader/nem_reader.py @@ -194,24 +194,30 @@ def get_pivot_data_frame( for col in df.columns: if "value_" in col: new_names[col] = col[6:] + if "quality" in col: - if not quality: + perc_nans = df[col].isna().sum() / len(df[col]) + if not quality and perc_nans < 0.5: new_names[col] = "quality" + quality += 1 else: del df[col] - quality += 1 + if "evt_code" in col: - if not evt_code: + perc_nans = df[col].isna().sum() / len(df[col]) + if not evt_code and perc_nans < 0.5: new_names[col] = "evt_code" + evt_code += 1 else: del df[col] - evt_code += 1 + if "evt_desc" in col: - if not evt_desc: + perc_nans = df[col].isna().sum() / len(df[col]) + if not evt_desc and perc_nans < 0.5: new_names[col] = "evt_desc" + evt_desc += 1 else: del df[col] - evt_desc += 1 df.rename(columns=new_names, inplace=True) return df diff --git a/nemreader/version.py b/nemreader/version.py index 3e2f46a..d69d16e 100644 --- a/nemreader/version.py +++ b/nemreader/version.py @@ -1 +1 @@ -__version__ = "0.9.0" +__version__ = "0.9.1" diff --git a/requirements.txt b/requirements.txt index e4596b7..edcef9f 100644 --- a/requirements.txt +++ b/requirements.txt @@ -7,34 +7,44 @@ click==8.1.7 # typer click-default-group==1.2.4 # via sqlite-utils -coverage==7.4.4 +coverage==7.5.3 # via pytest-cov -exceptiongroup==1.2.0 +exceptiongroup==1.2.1 # via pytest iniconfig==2.0.0 # via pytest -mypy==1.9.0 +markdown-it-py==3.0.0 + # via rich +mdurl==0.1.2 + # via markdown-it-py +mypy==1.10.0 mypy-extensions==1.0.0 # via mypy numpy==1.26.4 # via pandas packaging==24.0 # via pytest -pandas==2.2.1 -pluggy==1.4.0 +pandas==2.2.2 +pluggy==1.5.0 # via # pytest # sqlite-utils -pytest==8.1.1 +pygments==2.18.0 + # via rich +pytest==8.2.1 # via pytest-cov -pytest-cov==4.1.0 +pytest-cov==5.0.0 python-dateutil==2.9.0.post0 # via # pandas # sqlite-utils pytz==2024.1 # via pandas -ruff==0.3.4 +rich==13.7.1 + # via typer +ruff==0.4.6 +shellingham==1.5.4 + # via typer six==1.16.0 # via python-dateutil sqlite-fts4==1.0.3 @@ -47,8 +57,8 @@ tomli==2.0.1 # coverage # mypy # pytest -typer==0.9.0 -typing-extensions==4.10.0 +typer==0.12.3 +typing-extensions==4.12.0 # via # mypy # typer diff --git a/tests/test_dataframe_pivot.py b/tests/test_dataframe_pivot.py index cd5114c..5781a3c 100644 --- a/tests/test_dataframe_pivot.py +++ b/tests/test_dataframe_pivot.py @@ -21,3 +21,17 @@ def test_pivot_dataframe(): for suffix in ["t_start", "E1", "E2", "V1", "quality", "evt_code", "evt_desc"]: assert suffix in df.columns assert len(df) == 48 + + +def test_pivot_dataframe_partialchannel(): + """Test example where some days are missing from first channel in file""" + nf = NEMFile("examples/unzipped/Example_NEM12_partialchannel.csv", strict=True) + + # The intervals are different, so we have 48 30min + 144 10min = 192 rows + df = nf.get_pivot_data_frame(set_interval=30) + for suffix in ["t_start", "B1", "E1", "quality", "evt_code", "evt_desc"]: + assert suffix in df.columns + assert len(df) == 1488 + for col in ["t_start", "E1", "quality", "evt_code", "evt_desc"]: # only B1 has nans + perc_nans = df[col].isna().sum() / len(df[col]) + assert perc_nans == 0.0