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solition to brows a large debruin graph
Java Python
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data
Edge.pde
ForcedNode.pde
Graph.pde
Node.pde
README
SpringEdge.pde
Vector3d.pde
chr01.fsa
chr01.fsa_screed
chr02.fsa
chr02.fsa_screed
kMerBrowserInterface.pde
kmerBrowser.py

README

this code has two applications the python/quixote server kmerBrowser.py
and the processing kMerBriwserInterface.pde project

you have to set the server for quixote to the same address KBI uses

make all your files you want to consume screed repositories, it is possible that the current code
tries to load more files then you actually have, update line 26 in kmerbrowser.py accordingly

for the processing project you have to include all pde files in the same project and also create
a font called : ArialRoundedMTBold-20 which is saved in the data file of the project, it is
possible that you have to redo this step when compiling for the first time

in kmerbrowserinterface you have to use depth to set the radius
and also make sure the startingKmer (line 11) has the right length and exists


you control kmerbrowserinterface with the mouse, scrollwheel to zoom, . , to increase
or decrease the radius, click and drab besides the graph allows to move the screen, 
press t if you want to toggle the text on/off (increases rendering speed), click a node
so that it becomes blue and click GO to make this node the new center of the graph

exercise caution when using low k or highly tangled graphs together with a high radius, since that
might
overload the graph and you end up freezing both apps.

Cheers Arend
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