From 49720fdfa8d3a33c72379bfd887f0614f2bcb6ac Mon Sep 17 00:00:00 2001 From: darynaishchenko Date: Fri, 3 May 2024 18:44:50 +0300 Subject: [PATCH 1/4] added fastparquet for parquet files reader --- .../connectors/source-file/metadata.yaml | 2 +- .../connectors/source-file/poetry.lock | 227 ++++++++++++++++-- .../connectors/source-file/pyproject.toml | 5 +- .../source-file/source_file/client.py | 3 + 4 files changed, 208 insertions(+), 29 deletions(-) diff --git a/airbyte-integrations/connectors/source-file/metadata.yaml b/airbyte-integrations/connectors/source-file/metadata.yaml index fcce3e7eda64df..3a292e3fac96e0 100644 --- a/airbyte-integrations/connectors/source-file/metadata.yaml +++ b/airbyte-integrations/connectors/source-file/metadata.yaml @@ -10,7 +10,7 @@ data: connectorSubtype: file connectorType: source definitionId: 778daa7c-feaf-4db6-96f3-70fd645acc77 - dockerImageTag: 0.5.0 + dockerImageTag: 0.5.1 dockerRepository: airbyte/source-file documentationUrl: 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"source-file" description = "Source implementation for File" authors = [ "Airbyte ",] @@ -21,7 +21,7 @@ html5lib = "==1.1" beautifulsoup4 = "==4.11.1" openpyxl = "==3.0.10" google-cloud-storage = "==2.5.0" -pandas = "==1.4.3" +pandas = "1.5.0" airbyte-cdk = "^0" paramiko = "==2.11.0" xlrd = "==2.0.1" @@ -32,6 +32,7 @@ lxml = "==4.9.1" gcsfs = "==2022.7.1" pyxlsb = "==1.0.9" genson = "==1.2.2" +fastparquet = "^2024.2.0" [tool.poetry.scripts] source-file = "source_file.run:run" diff --git a/airbyte-integrations/connectors/source-file/source_file/client.py b/airbyte-integrations/connectors/source-file/source_file/client.py index 8aa58710668459..3fefe72823c7cb 100644 --- a/airbyte-integrations/connectors/source-file/source_file/client.py +++ b/airbyte-integrations/connectors/source-file/source_file/client.py @@ -362,6 +362,9 @@ def load_dataframes(self, fp, skip_data=False, read_sample_chunk: bool = False) elif self._reader_format == "excel_binary": reader_options["engine"] = "pyxlsb" yield reader(fp, **reader_options) + elif self._reader_format == "parquet": + reader_options["engine"] = "fastparquet" + yield reader(fp, **reader_options) elif self._reader_format == "excel": # Use openpyxl to read new-style Excel (xlsx) file; return to pandas for others try: From d1ad460b626531df51a56133cb152c5045444be5 Mon Sep 17 00:00:00 2001 From: darynaishchenko Date: Fri, 3 May 2024 18:45:18 +0300 Subject: [PATCH 2/4] added changelog record --- docs/integrations/sources/file.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/docs/integrations/sources/file.md b/docs/integrations/sources/file.md index 67bca4921a2a21..0e805e4864b881 100644 --- a/docs/integrations/sources/file.md +++ b/docs/integrations/sources/file.md @@ -218,8 +218,9 @@ In order to read large files from a remote location, this connector uses the [sm | Version | Date | Pull Request | Subject | |:--------|:-----------|:---------------------------------------------------------|:--------------------------------------------------------------------------------------------------------| -| 0.5.0 | 2024-03-19 | [36267](https://github.com/airbytehq/airbyte/pull/36267) | Pin airbyte-cdk version to `^0` | -| 0.4.1 | 2024-03-04 | [35800](https://github.com/airbytehq/airbyte/pull/35800) | Add PyAirbyte support on Python 3.11 | +| 0.5.1 | 2024-05-03 | | Add fastparquet engine for parquet file reader. | +| 0.5.0 | 2024-03-19 | [36267](https://github.com/airbytehq/airbyte/pull/36267) | Pin airbyte-cdk version to `^0` | +| 0.4.1 | 2024-03-04 | [35800](https://github.com/airbytehq/airbyte/pull/35800) | Add PyAirbyte support on Python 3.11 | | 0.4.0 | 2024-02-15 | [32354](https://github.com/airbytehq/airbyte/pull/32354) | Add Zip File Support | | 0.3.17 | 2024-02-13 | [34678](https://github.com/airbytehq/airbyte/pull/34678) | Add Fixed-Width File Support | | 0.3.16 | 2024-02-12 | [35186](https://github.com/airbytehq/airbyte/pull/35186) | Manage dependencies with Poetry | From 651edc3816a159c033a5b8190bdbd146d00df459 Mon Sep 17 00:00:00 2001 From: darynaishchenko Date: Fri, 3 May 2024 18:53:32 +0300 Subject: [PATCH 3/4] updated changelog --- docs/integrations/sources/file.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/integrations/sources/file.md b/docs/integrations/sources/file.md index 0e805e4864b881..4c90ef11458a62 100644 --- a/docs/integrations/sources/file.md +++ b/docs/integrations/sources/file.md @@ -218,7 +218,7 @@ In order to read large files from a remote location, this connector uses the [sm | Version | Date | Pull Request | Subject | |:--------|:-----------|:---------------------------------------------------------|:--------------------------------------------------------------------------------------------------------| -| 0.5.1 | 2024-05-03 | | Add fastparquet engine for parquet file reader. | +| 0.5.1 | 2024-05-03 | 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"pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6,!=8.1.1)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] [[package]] @@ -2495,6 +2674,21 @@ files = [ {file = "soupsieve-2.5.tar.gz", hash = "sha256:5663d5a7b3bfaeee0bc4372e7fc48f9cff4940b3eec54a6451cc5299f1097690"}, ] +[[package]] +name = "tenacity" +version = "8.3.0" +description = "Retry code until it succeeds" +optional = false +python-versions = ">=3.8" +files = [ + {file = "tenacity-8.3.0-py3-none-any.whl", hash = "sha256:3649f6443dbc0d9b01b9d8020a9c4ec7a1ff5f6f3c6c8a036ef371f573fe9185"}, + {file = "tenacity-8.3.0.tar.gz", hash = "sha256:953d4e6ad24357bceffbc9707bc74349aca9d245f68eb65419cf0c249a1949a2"}, +] + +[package.extras] +doc = ["reno", "sphinx"] +test = ["pytest", "tornado (>=4.5)", "typeguard"] + [[package]] name = "toml" version = "0.10.2" @@ -2508,13 +2702,24 @@ files = [ [[package]] name = "typing-extensions" -version = "4.10.0" +version = "4.11.0" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.10.0-py3-none-any.whl", hash = "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475"}, - {file = "typing_extensions-4.10.0.tar.gz", hash = "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"}, + {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"}, + {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"}, +] + +[[package]] +name = "tzdata" +version = "2024.1" +description = "Provider of IANA time zone data" +optional = false +python-versions = ">=2" +files = [ + {file = "tzdata-2024.1-py2.py3-none-any.whl", hash = "sha256:9068bc196136463f5245e51efda838afa15aaeca9903f49050dfa2679db4d252"}, + {file = "tzdata-2024.1.tar.gz", hash = "sha256:2674120f8d891909751c38abcdfd386ac0a5a1127954fbc332af6b5ceae07efd"}, ] [[package]] @@ -2773,4 +2978,4 @@ multidict = ">=4.0" [metadata] lock-version = "2.0" python-versions = "^3.9,<3.12" -content-hash = "89de5fc6c5641f23a5d1e4d9dd7d296a39acdb373a33d53180c250a57a6a585c" +content-hash = "029441ef128251a0f9995bb4c3bb4e0af2ca581bf5a9420d227ca0b819a7b7c5" diff --git a/airbyte-integrations/connectors/source-file/pyproject.toml b/airbyte-integrations/connectors/source-file/pyproject.toml index 5a65fdbd136314..e93f1dc213c689 100644 --- a/airbyte-integrations/connectors/source-file/pyproject.toml +++ b/airbyte-integrations/connectors/source-file/pyproject.toml @@ -19,9 +19,9 @@ include = "source_file" python = "^3.9,<3.12" html5lib = "==1.1" beautifulsoup4 = "==4.11.1" -openpyxl = "==3.0.10" +openpyxl = "==3.1.0" google-cloud-storage = "==2.5.0" -pandas = "1.5.0" +pandas = "2.2.2" airbyte-cdk = "^0" paramiko = "==2.11.0" xlrd = "==2.0.1" @@ -30,7 +30,7 @@ pyarrow = "14.0.2" s3fs = "==2022.7.1" lxml = "==4.9.1" gcsfs = "==2022.7.1" -pyxlsb = "==1.0.9" +pyxlsb = "==1.0.10" genson = "==1.2.2" fastparquet = "^2024.2.0" diff --git a/airbyte-integrations/connectors/source-file/source_file/client.py b/airbyte-integrations/connectors/source-file/source_file/client.py index 3fefe72823c7cb..44ceda11cda592 100644 --- a/airbyte-integrations/connectors/source-file/source_file/client.py +++ b/airbyte-integrations/connectors/source-file/source_file/client.py @@ -423,7 +423,7 @@ def read(self, fields: Iterable = None) -> Iterable[dict]: df = self.load_yaml(fp) columns = fields.intersection(set(df.columns)) if fields else df.columns df = df.where(pd.notnull(df), None) - yield from df[columns].to_dict(orient="records") + yield from df[list(columns)].to_dict(orient="records") else: fields = set(fields) if fields else None if self.binary_source: