diff --git a/AIRR_Minimal_Standard_Data_Elements.tsv b/AIRR_Minimal_Standard_Data_Elements.tsv index 491346727..fc333f597 100644 --- a/AIRR_Minimal_Standard_Data_Elements.tsv +++ b/AIRR_Minimal_Standard_Data_Elements.tsv @@ -53,7 +53,6 @@ MiAIRR data set / subset MiAIRR field designation Data type Content format MiAIR 3 / process (nucl. acid) Library generation method string {"controlled_vocabulary": ["PCR", "RT(RHP)+PCR", "RT(oligo-dT)+PCR", "RT(oligo-dT)+TS+PCR", "RT(oligo-dT)+TS(UMI)+PCR", "RT(specific)+PCR", "RT(specific)+TS+PCR", "RT(specific)+TS(UMI)+PCR", "RT(specific+UMI)+PCR", "RT(specific+UMI)+TS+PCR", "RT(specific)+TS", "other"]} Generic type of library generation RT(oligo-dT)+PCR library_generation_method 3 / process (nucl. acid) Library generation protocol string Free text Description of processes applied to substrate to obtain a library that is ready for sequencing cDNA was generated using library_generation_protocol 3 / process (nucl. acid) Protocol IDs string Free text When using a library generation protocol from a commercial provider, provide the protocol version number v2.1 (2016-09-15) library_generation_kit_version -<<<<<<< HEAD 3 / process (nucl. acid [pcr]) Target locus for PCR string Free text Designation of the target locus according to standard gene nomencleature Constant region vs. V region amplification pcr_target_locus 3 / process (nucl. acid [pcr]) Forward PCR primer target location string Free text Position of the most distal nucleotide templated by the forward primer or primer mix IGHV, +23 forward_pcr_primer_target_location 3 / process (nucl. acid [pcr]) Reverse PCR primer target location string Free text Position of the most proximal nucleotide templated by the reverse primer or primer mix IGHG, +57 reverse_pcr_primer_target_location diff --git a/tests/check-consistency-miairr.py b/tests/check-consistency-miairr.py index 9b0db21a4..22bd10dcd 100755 --- a/tests/check-consistency-miairr.py +++ b/tests/check-consistency-miairr.py @@ -15,7 +15,7 @@ '3 / process (cell)': 'CellProcessing', '3 / process (nucl. acid)': 'NucleicAcidProcessing', '3 / process (nucl. acid [pcr])': 'PCRTarget', - '3 / process (nucl. acid sequencing)': 'SequencingRun', + '3 / process (sequencing)': 'SequencingRun', '5 / process (comput.)': 'SoftwareProcessing', '6 / data (proc. seq.)': 'Rearrangement'}