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Section on Germline Gene Data Query and Download

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williamdlees authored and schristley committed Oct 22, 2019
1 parent d8910ec commit e1088a173156c056d89af0bec2fe9d4473723cb1
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  1. +11 −1 docs/standards/data_submission.rst
@@ -53,10 +53,20 @@ query and download AIRR-seq data.

+ VDJServer Community Data Portal

**Other Public Data Repositories**
**Other Public AIRR-Seq Repositories**

There are additional data repositories that provide access to AIRR-seq data but which
did not implement the ADC API for programmatic access. Information about some of these
repositories are provided in a `B-T.CR forum post`_.

.. _`B-T.CR forum post`: https://b-t.cr/t/publicly-available-airr-seq-data-repositories/610

**Germline Gene Inference and Usage**

+ OGRDB <../ogrdb/ogrdb> provides a list of alleles affirmed by the AIRR Community's
Inferred Allele Review Committee, together with supporting information.

+ `VDJbase`_ provides gene usage information derived from a growing base of AIRR-seq repertoires,
including inferred genotypes and haplotypes.

.. _`VDJbase`: https://www.vdjbase.org

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