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Commits on Apr 4, 2019
  1. Update link to DataRep WG page

    bussec authored and schristley committed Mar 12, 2019
  2. Update README.rst

    bussec authored and schristley committed Mar 12, 2019
    Add reference to DataRep WG's Front Immunol paper. Add stub text
    describing DataRep artifacts. Update links. Update copyright notes.
Commits on Apr 1, 2019
  1. Merge MiAIRR YAML into general AIRR schema

    bussec authored and schristley committed Mar 6, 2019
    Addressing issue #29. All keys originating from MiAIRR are prefixed
    with `x-miairr-`. Further re-sorting of these keys might take place
    in future commits.
  2. Add MiAIRR "required" and "nullable" constrains to AIRR schema

    bussec authored and schristley committed Mar 6, 2019
    As discussed in issue #96, the majority of keys defined by MiAIRR
    can contain NULL values (i.e. they are `recommended`). However, a
    smaller set of `required` keys must contain a meaningful non-NULL
    value, as they are considered essential annotation for every
    experiment. This information is currently lacking from the AIRR
    schema YAML. Also "x-miairr" should be used only as prefix not as
    key by itself to allow for future extensions. All AIRR schema
    keys that do not contain the `x-miairr-required` subkey are
    considered `optional` from the MiAIRR prespective.
    
    Replace `x-miairr` with `x-miairr-required` keys. Remove
    `x-miairr-required` keys with `false` values. Add
    `x-miairr-nullable` keys.
Commits on Feb 18, 2019
  1. Update AIRR schema file in R package

    bussec authored and schristley committed Feb 15, 2019
  2. Controlled vocabulary for pcr_target_locus

    bussec authored and schristley committed Feb 15, 2019
    The current description and examples for key `pcr_target_locus` do
    not match. Furthermore there is some ambiguity about the term "locus".
    See #175.
    
    Introduce controlled vocabulary and clarify description and example.
  3. Fix error in MiAIRR-to-NCBI doc

    bussec authored and schristley committed Oct 1, 2018
  4. Fix typo

    bussec authored and schristley committed Oct 1, 2018
  5. Update SRA libary_* mapping

    bussec authored and schristley committed May 16, 2018
Commits on Feb 15, 2019
  1. Update AIRR schema file in R package

    bussec committed Feb 15, 2019
  2. Controlled vocabulary for pcr_target_locus

    bussec committed Feb 15, 2019
    The current description and examples for key `pcr_target_locus` do
    not match. Furthermore there is some ambiguity about the term "locus".
    See #175.
    
    Introduce controlled vocabulary and clarify description and example.
  3. Include recent MiAIRR refinements

    bussec committed Feb 15, 2019
    The recent changes introduced via the `miairr_refinement` branch
    (PR #155) will potentially conflict with the changes in CRWG-API.
    
    Resolve conflicts.
Commits on Oct 15, 2018
  1. Fix error in MiAIRR-to-NCBI doc

    bussec committed Oct 1, 2018
  2. Fix typo

    bussec committed Oct 1, 2018
  3. Update SRA libary_* mapping

    bussec committed May 16, 2018
Commits on Apr 30, 2018
  1. Update citation links (#131)

    bussec authored and javh committed Apr 30, 2018
    The MiAIRR manuscript is now freely available at PubMed Central.
    Add/update the links in the reference section.
Commits on Apr 9, 2018
  1. Move content of NCBI_implementation/README.md to Sphinx documentation

    bussec authored and schristley committed Apr 6, 2018
    - move linked images into docs/ tree
    - minor restructuring of MiAIRR documentation files
  2. Remove old MiAIRR-to-NCBI specification

    bussec authored and schristley committed Apr 6, 2018
    Content has been transferred to RST system in commit 0b14b6b.
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