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Branch: master
Commits on Mar 6, 2019
  1. Update .gitignore for VSCode

    laserson authored and schristley committed Mar 4, 2019
Commits on Jan 26, 2018
  1. Remove unused Jekyll boilerplate

    laserson committed Jan 26, 2018
  2. Remove remnants of old airr-formats repo

    laserson committed Jan 26, 2018
  3. Added pyyaml to docs build

    laserson committed Jan 26, 2018
  4. Add Alignment object to definitions.yaml (#67)

    laserson committed Jan 26, 2018
  5. Fix travis file by removing difflib (stdlib)

    laserson committed Jan 26, 2018
  6. Minor refactoring consistency checks and cleanup

    laserson committed Jan 26, 2018
Commits on Dec 12, 2017
  1. Fix dummy Alignment object

    laserson authored and schristley committed Dec 1, 2017
  2. Initial merged Sphinx docs

    laserson authored and schristley committed Nov 30, 2017
Commits on Nov 7, 2017
  1. Merge remote-tracking branch 'airr-formats/master'

    laserson committed Nov 7, 2017
    * airr-formats/master: (57 commits)
      Updated alignment doc with note on CIGARs
      Use OpenAPI types (float => number)
      Changeo integration (#53)
      Switched to rearrangement_id
      Metadata should be stored in a separate file
      fix errors when missing metadata file
      fix merge errors
      Propagate schema changes
      Clarified junction vs CDR3 issue
      Clarify duplicate and consensus counts
      Reorganized scripts
      Improve error messages in ensure-consistency.py
      Add Travis status to README
      Initial Travis setup (#39)
      Update README and `docs/` (#38)
      use csv package, put metadata in separate file
      rearrangements.yaml reconciliation
      Converted CDR3 fields to junction fields, added a few missing positional fields, and added a consensus reads field (`consensus_count`).
      1. Set missing data to output empty strings. 2. Changed termination on missing data in mandatory fields to either a warning (debug=True) or silent pass through (debug=False).
      Added cast of output to string before writing.
      ...
Commits on Nov 6, 2017
  1. Updated alignment doc with note on CIGARs

    laserson committed Nov 6, 2017
    Fixes #55.
Commits on Nov 5, 2017
  1. Refactor consistency check

    laserson committed Nov 5, 2017
    Fixes #51
  2. Changed data types in table to OpenAPI types

    laserson committed Nov 5, 2017
    Fixes #5
Commits on Oct 26, 2017
  1. Switch to [vdjc]_call

    laserson authored and bussec committed Oct 23, 2017
Commits on Oct 23, 2017
  1. Added NCBI BioSample excel template to tests

    laserson committed Oct 23, 2017
  2. Switched to rearrangement_id

    laserson committed Oct 23, 2017
    Fixes #46
Commits on Oct 20, 2017
  1. Added Travis status to README

    laserson authored and bussec committed Oct 9, 2017
  2. Initial Travis setup

    laserson authored and bussec committed Oct 8, 2017
Commits on Oct 9, 2017
  1. Propagate schema changes

    laserson committed Oct 9, 2017
  2. Clarified junction vs CDR3 issue

    laserson committed Oct 9, 2017
    Fixes #27
  3. Clarify duplicate and consensus counts

    laserson committed Oct 9, 2017
    Fixes #33
  4. Reorganized scripts

    laserson committed Oct 9, 2017
  5. Move travis status to more logical location in README

    laserson committed Oct 9, 2017
  6. Added Travis status to README

    laserson committed Oct 9, 2017
Commits on Oct 8, 2017
  1. Initial Travis setup

    laserson committed Oct 8, 2017
  2. Add Travis status to README

    laserson committed Oct 8, 2017
  3. Initial Travis setup (#39)

    laserson committed Oct 8, 2017
    Make specs consistent
Commits on Sep 9, 2017
Commits on Aug 7, 2017
  1. Change cdr3_na to cdr3_nt

    laserson committed Aug 7, 2017
  2. Treat constant region as alignment-derived

    laserson committed Aug 7, 2017
    Fixes #22.
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