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@javh javh released this Oct 13, 2020

Overview

  • Improvements to the organization and wording of various documentation pages.
  • Added missing deprecation tags for rearrangement_id in the Alignment schema.
  • Modified merge_rearrangement in the airr python library so that it can handle a large number of files.
  • Improved validation error handling in the airr python library.

Full Release Notes:

Assets 5

@schristley schristley released this Jun 1, 2020

Version 1.3 of the AIRR Schema

Major changes:

  • First official release of the Repertoire metadata schema.
  • First official release of the AIRR Data Commons API specification.
  • Expansion of schema field annotations.
  • Extensions to the Rearrangement schema for multiple D regions.
  • New experimental schema for clones, lineage trees, and cells.

Full Release Notes:

Assets 6
  • v1.2.1
  • 26e0cf9
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@javh javh released this Oct 5, 2018

Fixed a bug in the python reference library causing start coordinate values to be empty in some cases when writing data.

Python library release notes.

Assets 3

@javh javh released this Aug 18, 2018

Schema Release Notes

Definition change for the coordinate fields of the Rearrangement and Alignment schema. Coordinates are now defined as 1-based closed intervals, instead of 0-based half-open intervals (as previously defined in v1.1 of the schema).

Reference Library Release Notes

Several changes to the python and R reference library to support the new schema coordinate definition and improve validation. See the package release notes for details:

Assets 5

@javh javh released this May 3, 2018

Initial official release of the AIRR Data Representation standards and associated python and R reference libraries.

Assets 6
Pre-release

@schristley schristley released this Feb 27, 2018

An early revision of the AIRR definitions with corresponding reference library.

Assets 2
  • v1.0.0
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@schristley schristley released this Jan 9, 2018

This is the V1 release of the Standard for the Minimum information about an Adaptive Immune Receptor Repertoire Sequencing Experiment (MiAIRR V1).

Description of MiAIRR V1 can be found in this article:

  • Rubelt, F. et al. Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data. Nat Immunol 18:1274-1278 (2017) [PMID:29144493]

Description of the Adaptive Immune Receptor Repertoire (AIRR) Community can be found in this article:

  • Breden, F. et al. Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data. Frontiers Immunol 8:1418 (2017) [PMID:29163494]

The V1 release defines the primary data elements as the minimum information to be archived with an adaptive immune receptor repertoire sequencing experiment. The computational specifications, data file formats, and reference libraries are still being finalized and will be released in a later version.

Assets 2
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  • v0.1.0
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@schristley schristley released this Oct 27, 2017

Merge pull request #40 from airr-community/development

In preparation for release
Assets 2