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MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.
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README.md

MEXPRESS

About

MEXPRESS is a data visualization tool designed for the easy visualization of TCGA expression, DNA methylation and clinical data, as well as the relationships between them. It has been published in BMC Genomics: http://www.biomedcentral.com/1471-2164/16/636.

This repository contains the back and front-end code to of the original version of MEXPRESS (https://mexpress.be/old/mexpress.php). You can find the new version at https://mexpress.be.

This repo also includes the different scripts that are used to download and process the TCGA data that is needed for the tool to work.

NOTICE

The TCGA data has recently been migrated to the Genomic Data Commons website. This means that the scripts I wrote to download the data from the original TCGA repository DO NOT WORK ANYMORE. The new version of MEXPRESS pulls all its TCGA data from the public data hubs of the Xena browser.

Contact

Please get in touch if you have any questions or comments! a.koch@maastrichtuniversity.nl

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