Enforced the consistent choice of supplementary chimeric alignments f…

…or overlapping mates.
alexdobin · Oct 1, 2018 · eda1b0e · eda1b0e
1 parent 456c589
commit eda1b0e
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Showing 6 changed files with 2 additions and 2 deletions.
diff --git a/bin/Linux_x86_64/STAR b/bin/Linux_x86_64/STAR
diff --git a/bin/Linux_x86_64/STARlong b/bin/Linux_x86_64/STARlong
diff --git a/bin/Linux_x86_64_static/STAR b/bin/Linux_x86_64_static/STAR
diff --git a/bin/Linux_x86_64_static/STARlong b/bin/Linux_x86_64_static/STARlong
diff --git a/source/ReadAlign_chimericDetectionPEmerged.cpp b/source/ReadAlign_chimericDetectionPEmerged.cpp
@@ -39,7 +39,7 @@ void ReadAlign::chimericDetectionPEmerged(ReadAlign &seRA) {
                 };
             };
             for (uint jj=0; jj<2; jj++) {
-                if (segLen[ii][jj]<segLmin) {
+                if (segLen[ii][jj]<segLmin || (segLen[ii][jj]==segLmin && trChim[ii].exons[0][EX_G]>trChim[ii-1].exons[0][EX_G])) {
                     segLmin=segLen[ii][jj];
                     i1=ii;//trChim of the shortest segment length
                     i2=jj;//mate of the shortest segment length

diff --git a/source/VERSION b/source/VERSION
@@ -1 +1 @@
-#define STAR_VERSION "STAR_2.6.1b"
+#define STAR_VERSION "STAR_2.6.1b_10-01"