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almaan/README.md

Hello World πŸ‘‹

Something brief about me

πŸ₯ in πŸ‡ΈπŸ‡ͺ | 🏠 in πŸ‡ΊπŸ‡Έ | ❀️ with πŸƒ

  • Who: I'm Alma Andersson, a Sr. AI Scientist at Genentech, working in the AI/ML Department as a part of the spatially focused team. I completed my PhD in 2019 after 2.5 amazing years in the Lundeberg lab focusing on computational method development for analysis of spatial-omics data.
  • Work: Currently, a lot of my work focuses on designing and implementing computational models designed to capture the fundamental elements of tissue biology. This results in a mixture of probabilistic, dynamic, generative, and standard ML models. The main data modalities is spatial data and images.
  • Interests:
    • Technical: generative learning, uncertainty estimates, foundational models, dynamical systems, programming
    • Non-technical: running (my big passion), sports science, mountain climbing/hiking, video editing, modern and ancient history

Where to find me

  • 🏠 I reside in the beautiful Bay Area. I'm always down for a f2f chat.
  • 🌐 Website: differentiable[dot]net
  • πŸ“§ You can also reach out on email at alma.andersson[at]differentiable[dot]net
  • πŸ”₯ I used to post frequently on twitter, but given the dumpster fire it's turned into, I'm not very active. However, my account is πŸ‘‰ Twitter URL

Pinned Loading

  1. stereoscope stereoscope Public

    Spatial mapping of cell types by integration of transcriptomics data

    Python 87 24

  2. eggplant eggplant Public

    Jupyter Notebook 20 5

  3. sepal sepal Public

    sepal : Spatial Expression PAttern Locator

    Python 6 1

  4. her2st her2st Public

    Her2 Breast Cancer Project

    Jupyter Notebook 56 14

  5. ST-mLiver ST-mLiver Public

    Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver

    Jupyter Notebook 14 4

  6. space2h5ad space2h5ad Public

    Automatic conversion of spacerange output to h5ad format

    Python 3