The base code of NeuroCausal, a platform for meta-analysis of the neuropsychological data inspired by NeuroQuery.
Given a cognitive/psychological term (e.g. face processing), it produces a brain map of the brain area whose integrity is necessary to enable such processe/representation (e.g. a lesion in that area would lead to prosopagnosia).
If you would like to know more about our mission and goals, please read our blogposts
Please check our Guidelines for Contributors. This guideline is currently under construction and soon will have necessary details regarding the technical aspect of the package too!
The development of the NeuroCausal meta-analysis pipeline will be built on NeuroQuery metaanalysis and pubget packages.
We would like you to install both NeuroQuery packages by following the commands below:
To install the main repo version of the pubget, type
pip install git+https://github.com/neuroquery/pubget.git
To install the NeuroQuery type
pip install pubget
The packages will install additional packages listed in their requirement lists they list in their repository what NeuroCausal will be also sticking with.
If you do not want the versions of the listed packages in your codebase to change you can also create a new conda environment following the instructions here
Querying, downloading, and filtering the openly accessible clinical publications and metaanalysis of the brain functioning associated with the clinical cases.
We wouldn't be here without
- the terrific OLS program
- our brilliant and generous mentor, Sara El-Gebali @selgebali
- the tools we are building upon: Neurosynth, Neuroquery, Neurovault, & CognitiveAtlas
- the Brainhack community
https://hackmd.io/@IsilBilgin/B1ljxcMuc
Recurring every Monday 12:00-1:00 EDT
Meeting ID: 898 4780 8975 Passcode: 074971
Pomodoro clock: https://cuckoo.team/neurocausal
| Duration | Activity |
|---|---|
| Start | 👋 Welcome |
| 5 mins | Introductions and personal goal setting |
| 20 mins | 🍅 1st Pomodoro session |
| 5 mins | ☕️ Break and report out |
| 20 mins | 🍅 2nd Pomodoro session |
| 10 mins | 🎤 Discussions & shared insights |