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Update dependencies check: package whitelist #417

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merged 4 commits into from Feb 25, 2020

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dsherry
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@dsherry dsherry commented Feb 25, 2020

Only do the check for a specific whitelist of packages. To reduce noise.

@@ -177,7 +177,8 @@ jobs:
command: |
source test_python/bin/activate
mkdir /tmp/dependencies_updated_artifacts
pip freeze | grep -v "FeatureLabs/evalml.git" > /tmp/dependencies_updated_artifacts/current_dependencies.txt
export whitelist="pandas|numpy|scikit|xgboost|catboost|boto|category-encoders|cloudpickle|dask|distributed|pyzmq|statsmodels"
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@dsherry dsherry Feb 25, 2020

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There's gotta be a better way to do this but this works 🤷‍♂️

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@dsherry dsherry Feb 25, 2020

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What else should be in this list? I'd include anything which could cause mathematical or numerical precision errors, or generally anything which could cause a unit test failure.

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codecov bot commented Feb 25, 2020

Codecov Report

Merging #417 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #417   +/-   ##
=======================================
  Coverage   97.39%   97.39%           
=======================================
  Files         103      103           
  Lines        3224     3224           
=======================================
  Hits         3140     3140           
  Misses         84       84

Continue to review full report at Codecov.

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@dsherry dsherry mentioned this pull request Feb 25, 2020
@dsherry dsherry linked an issue Feb 25, 2020 that may be closed by this pull request
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@jeremyliweishih jeremyliweishih left a comment

I think this is a good start. If anything else comes up we can add them later. There is also the potential issue of sub-dependencies breaking these dependencies.

@dsherry dsherry merged commit 50095d7 into master Feb 25, 2020
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angela97lin pushed a commit that referenced this pull request Feb 25, 2020
* Add a whitelist for update_deps check

* Remove from expected

* Update deps

* Changelog
@angela97lin angela97lin mentioned this pull request Mar 9, 2020
angela97lin added a commit that referenced this pull request Apr 3, 2020
* creating new binary / multiclass variants of pipelines, duplicating code for now

* moving common fxns back to pipeline base

* more moving around fxns in pipelines classes

* capping xgboost

* fixing typo

* more cleanup, making predict_proba standard regardless of binary/multiclass

* renaming other_objectives to objectives

* updating score's objective parameter to calculate all objectives, not just additional

* removing self.objective for scoring

* removing objectives from pipeline initialization, adding objective as predict param

* remove xgboost cap from branch

* changelog

* capping xgboost on local branch since tests timing out

* cleaning up

* more cleanup

* reverting requirements file

* adding classification pipeline subclass, cleaning up via PR comments

* more cleanup for docstrings

* more cleanup of changelog and comments

* putting tests in subfolders and adding few more tests

* Update dependencies  (#412)

* Update latest dependencies

* Hide features with zero importance in plot by default (#413)

* adding functionality and test

* changelog and adding boolean param

* Update dependencies check: package whitelist (#417)

* Add a whitelist for update_deps check

* Remove from expected

* Update deps

* Changelog

* adding skeleton for subclasses

* fixing test and linting

* updating change from master

* fixing fixture

* cherry picked wip remove ROC and confusion matrix

* fixing merge

* fixing merge

* cleaning up

* make test use static attribute instead of instance'

* deleting needs_fitting

* updating code to use new objective classes, still broken

* updating threshold, still need to clean up tests

* comment out for now

* more cleanup

* cleaning up

* more cleanup

* still more cleanup

* fixing plot unsuccessful merging

* more cleanup but still some things to work out

* cleaning up using multiclass objectives for binary classification problems

* fixing typo with recall and cleanup

* cleaning up

* adding default

* some more cleaning up

* removing irrelevant test

* forgot to add attribute, breaking things again

* cleanup and change objective of test

* removing objective from predict

* more cleanup :d

* remove unused attribute

* cleaning up via comments

* more comments

* changelog

* order of decorators changed

* fixing copy and paste err

* update random state for binary class pipelines

* updating objective

* typo

* fixing?

* fixing imports

* fixing tests

* adding objective as parameter for predict, removing for fit

* cleaning up test

* more fixing test

* minor linting, need more to go

* more cleanup

* forgot to fix test

* more merging :x

* starting to add tuning logic to automl

* changelog

* cleaning up

* change conditional for objective split

* cleaning up docstrings

* forgot to use classificationobjective class...

* add additional cond

* adding tests

* cleanup

* removing decision function for multiclass

* updating via comments

* removing classification_objective file

* add test + more updates

* use cls instead for pep8 standards

* updating can_optimize to property

* update score

* fix tests

* minor cleanup from comments

* updating predict behavior

* add separate objective check

* fixing some merge conflicts cont

* add fraud test

* patching

* remove old test

* updating for now

* add another test

* add more tests

* adding test structure, still need to fix

* adding test

* fix iloc

* fix tests

* fix import

* fix test?

* removing can_optimize_threshold

* linting

* update docs a little

* remove accuracy

* add more doc fixes

* move binary and multi pipelines in api ref

* revert components notebook

* updating from comments

* oops, fix none set

* update docstring

* update api ref?

* addressing comments

* revert and update

* update docstring

* updating docstrings and lint

* updating unnecessary call to constructor

* pushing empty commit to refresh

Co-authored-by: Jeremy Shih <jeremyliweishih@gmail.com>
Co-authored-by: Dylan Sherry <sharshofski@gmail.com>
angela97lin added a commit that referenced this pull request Apr 13, 2020
* Objectives API: Create new binary / multiclass pipeline classes and remove objectives from pipeline classes (#405)

* Objectives API: Remove ROC and confusion matrix as objectives (#422)

* Change `score` output to return one dictionary (#429)

* Create binary and multiclass objective classes  (#504)

* Update dependencies  (#412)

* Hide features with zero importance in plot by default (#413)

* Update dependencies check: package whitelist (#417)

* Add fixes necessary for docs to build for improved objectives project (#605)

* Remove calculating plot metrics from AutoML  (#615)
@dsherry dsherry deleted the ds_416_dependencies_whitelist branch May 26, 2020
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Dependency update warning test: update to only check whitelist
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