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Update README.md

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alvason committed Dec 31, 2015
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## Epidemiological models
### [simple single strain SIR epidemiological model](https://github.com/alvason/infectious-pulse/blob/master/sir/sir.ipynb)
![](sir/figure/sir.png)
![](sir/figure/revivalSIR.png)
### [one strain SIR epidemiological model](https://github.com/alvason/infectious-pulse/blob/master/code/sir.ipynb)
![](figure/one-virus-sir.png)
![](figure/one-virus-revival-equilibrium.png)
### [many-strain SIR model with mutation](https://github.com/alvason/infectious-pulse/blob/master/sir-array/sir_array_mutation.ipynb)
![](sir-array/figure/infectious-pulse-mutation-continuous.png)
![](sir-array/figure/infectious-pulse-mutation-discrete.png)
![](sir-array/figure/many-strain-SIR.png)
### [many-strain SIR model with mutation](https://github.com/alvason/infectious-pulse/blob/master/code/sir_array_mutation.ipynb)
![](figure/infectious-pulse-mutation-continuous.png)
![](figure/infectious-pulse-mutation-discrete.png)
![](figure/many-strain-SIR.png)
### [many-strain SIR model with mutation and immunity](https://github.com/alvason/infectious-pulse/blob/master/sir-array/sir_array_mutation_immunity_event.ipynb)
![](sir-array/figure/infectious-pulse-mutation-immunity-event.png)
![](sir-array/figure/infectious-pulse-mutation-immunity-event-stacked.png)
### [many-strain SIR model with mutation and immunity](https://github.com/alvason/infectious-pulse/blob/master/code/sir_array_mutation_immunity_event.ipynb)
![](figure/infectious-pulse-mutation-immunity-event.png)
![](figure/infectious-pulse-mutation-immunity-event-stacked.png)
### [many-strain SIR model with mutation and immunity](https://github.com/alvason/infectious-pulse/blob/master/sir-array/sir_array_immunity.ipynb)
![](sir-array/figure/infectious-pulse-prevalence-incidence.png)
![](sir-array/figure/infectious-pulse-mutation-immunity-discrete.png)
### [many-strain SIR model with mutation and immunity](https://github.com/alvason/infectious-pulse/blob/master/code/sir_array_immunity.ipynb)
![](figure/infectious-pulse-prevalence-incidence.png)
![](figure/infectious-pulse-mutation-immunity-discrete.png)

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