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The position of Yosys developers (I say with my nMigen hat on) is that using proc_* passes in isolation is likely to break. We currently use them to prepare the netlist for write_verilog, which can't handle the netlist we emit as-is and requires it to be in a rather specific (and somewhat inconvenient) format.
What we do could almost certainly be replaced with proc -nomux (i.e. what the proc wrapper does minus proc_mux), which would be less fragile.
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