[DataCap Application] <National Institutes of Health> - <1000 Genomes> #42
Description
Data Owner Name
National Institutes of Health
Data Owner Country/Region
Afghanistan
Data Owner Industry
Life Science / Healthcare
Website
https://github.com/awslabs/open-data-docs/tree/main/docs/1000genomes
Social Media Handle
http://www.internationalgenome.org/contact
Social Media Type
Other
What is your role related to the dataset
Data Preparer
Total amount of DataCap being requested
7 PiB
Expected size of single dataset (one copy)
896 TiB
Number of replicas to store
8
Weekly allocation of DataCap requested
1 PiB
On-chain address for first allocation
f1yyvjru6ei4vuysexaxfa6kqskcp7zemtd7dalea
Data Type of Application
Public, Open Dataset (Research/Non-Profit)
Custom multisig
- Use Custom Multisig
Identifier
No response
Share a brief history of your project and organization
The 1000 Genomes Project is an international collaboration which has established the most detailed catalogue of human genetic variation, including SNPs, structural variants, and their haplotype context. The final phase of the project sequenced more than 2500 individuals from 26 different populations around the world and produced an integrated set of phased haplotypes with more than 80 million variants for these individuals.
Is this project associated with other projects/ecosystem stakeholders?
No
If answered yes, what are the other projects/ecosystem stakeholders
Describe the data being stored onto Filecoin
The 1000 Genomes Project is an international collaboration which has established the most detailed catalogue of human genetic variation, including SNPs, structural variants, and their haplotype context. The final phase of the project sequenced more than 2500 individuals from 26 different populations around the world and produced an integrated set of phased haplotypes with more than 80 million variants for these individuals.
Where was the data currently stored in this dataset sourced from
AWS Cloud
If you answered "Other" in the previous question, enter the details here
If you are a data preparer. What is your location (Country/Region)
Hong Kong
If you are a data preparer, how will the data be prepared? Please include tooling used and technical details?
We downloaded the data from https://registry.opendata.aws/1000-genomes/, classified the content, and then used the built-in tools officially provided by Lotus (Filecoin's reference implementation) to split, compress, and package the data, and finally distributed it to SPs.
If you are not preparing the data, who will prepare the data? (Provide name and business)
Has this dataset been stored on the Filecoin network before? If so, please explain and make the case why you would like to store this dataset again to the network. Provide details on preparation and/or SP distribution.
No.
Please share a sample of the data
aws s3 ls --no-sign-request s3://1000genomes/ 696.8063 TiB
s3://1000genomes/1000G_2504_high_coverage/additional_698_related/20130606_g1k_3202_samples_ped_population.txt
s3://1000genomes/1000G_2504_high_coverage/additional_698_related/20200526_1000G_2504plus698_high_cov_data_reuse_README.txt
s3://1000genomes/1000G_2504_high_coverage/additional_698_related/data/ERR3988761/HG00405.final.cram.crai
s3://1000genomes/1000G_2504_high_coverage/additional_698_related/data/ERR3988762/HG00408.final.cram
Confirm that this is a public dataset that can be retrieved by anyone on the Network
- I confirm
If you chose not to confirm, what was the reason
What is the expected retrieval frequency for this data
Yearly
For how long do you plan to keep this dataset stored on Filecoin
2 to 3 years
In which geographies do you plan on making storage deals
Asia other than Greater China, Europe, North America, South America
How will you be distributing your data to storage providers
HTTP or FTP server, Shipping hard drives
How did you find your storage providers
Partners
If you answered "Others" in the previous question, what is the tool or platform you used
Please list the provider IDs and location of the storage providers you will be working with.
f03649204 HongKong
f03649212 HongKong
f03649217 Singapore
f03649227 Singapore
f03637821 Germany
f03637813 Brazil
How do you plan to make deals to your storage providers
Boost client
If you answered "Others/custom tool" in the previous question, enter the details here
Can you confirm that you will follow the Fil+ guideline
Yes