R package for "State Transitions using Aggregated Markov Models" (STAMM)
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stamm
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README.org
example_code.r
stamm_0.8.tar.gz

README.org

State Transitions using Aggregate Markov Models

Installation

Please download the stamm_[version].tar.gz and install package in R using:

install.packages(file_name_and_path, repos = NULL, type="source")

Load Package anad Data

Once installed you can load the package with

library(stamm)

There is a demo data set included in the package you can load them as follows:

data(gdat) # simulated expression data
data(tdat) # time points
data(sim_data) # full simulation data

Example code

Also included is an example code file to obain main results