Andersen Laboratory @ Scripps Research

Repositories

• ivar

  Forked from gkarthik/ivar

  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

  variant-calling amplicon-sequencing
  C++ GPL-3.0 15 34 16 0 Updated Oct 20, 2020

• HCoV-19-Genomics-Nextstrain

  Repo for local NextStrain build
  1 0 2 0 Updated Sep 21, 2020

• SARS-CoV-2_Evolution
  0 0 0 0 Updated Sep 21, 2020

• HCoV-19-Genomics

  SARS-CoV-2 genomics

  genomics hcov-19
  1 2 0 0 Updated Sep 3, 2020

• zika-functional-evolution

  Mutagenesis studies to understand the functional evolution of Zika virus
  0 0 0 0 Updated Jul 28, 2020

• paper_2020_drc-ebola

  Repo for files relating to DRC Ebola outbreak paper
  0 0 0 0 Updated Jun 6, 2020

• west-nile-genomics-wnv4k

  West Nile virus genomic data produced as part of the WestNile 4K Project
  3 0 0 0 Updated May 26, 2020

• ivar-bioinformatics-protocol
  0 0 0 0 Updated Mar 25, 2020

• bat-metagenomics
  0 1 0 0 Updated Mar 16, 2020

• mosquito-metagenomics
  0 1 0 0 Updated Mar 2, 2020

• ebola-drc-epidemiology

  Repo for epidemiological data for the ongoing Ebola outbreak in the DRC
  0 0 0 0 Updated Feb 22, 2020

• lassa-ebola-hla

  HLA Genotype Sequencing of Hemorrhagic Fever Survivors using Illumina TruSight HLA v2 Sequencing Panel
  Python 4 1 0 0 Updated Jan 30, 2020

• paper_2018_primalseq-ivar
  Jupyter Notebook 2 2 0 0 Updated Jan 25, 2020

• wnv-phylogeography

  Preliminary west nile virus phylogeography analysis in California
  Python 0 0 0 0 Updated Nov 8, 2019

• west-nile-genomics-california

  Sequences from West Nile virus from California and beyond
  Python 0 0 0 0 Updated Nov 2, 2019

• paper_2018_cuba-travel-zika
  R 1 0 0 0 Updated Aug 23, 2019

• zika-phylogeography

  Forked from gkarthik/zika-phylogeography

  Zika Phylogeography
  HTML CC-BY-SA-4.0 2 2 1 0 Updated Aug 11, 2019

• ivar-validation

  Forked from gkarthik/ivar-validation
  R 1 0 0 0 Updated Jan 18, 2019

• VIC-Analysis

  Forked from gkarthik/VIC-Analysis

  Data Analysis for VIC
  3 1 0 0 Updated Jan 18, 2019

• dengue-florida

  Sequences from 2013 DENV-1 outbreak in Martin County, Florida
  0 0 0 0 Updated Jan 18, 2019

• zika-genomics

  Zika virus genomics
  2 5 1 0 Updated Jan 18, 2019

• zika-epidemiology

  Zika Epidemiology - Case Numbers
  Python 4 5 0 0 Updated Jan 18, 2019

• zika-pipeline Archived
  Python 0 3 0 0 Updated Jan 5, 2018

• viral-sequence-analysis Archived
  Python 1 1 0 0 Updated Jan 5, 2018