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Gzipped fastqs. Updated table in README.

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gkarthik committed Oct 25, 2018
1 parent 672110a commit e3bd5e7078ed22f9c2fe86d6175e4739eb5e1f21
@@ -6,39 +6,41 @@
#### Samples

| Scripps ID | Date | Sample type | Quality score | % Coverage | Location of infection |
| :--- | :--- | :--- | :--- | :--- | :--- |
| FL001Sa | 2016.03.22 | Saliva | *** | 99.71 | Martinique |
| FL008U | 2016.06.21 | Urine | *** | 90.07 | Puerto Rico |
| FL010U | 2016.06.22 | Urine | **** | 97.69 | USA: Florida |
| FL016U | 2016.07.03 | Urine | *** | 99.88 | Puerto Rico |
| FL021U | 2016.07.19 | Urine | *** | 97.45 | USA: Florida |
| FL022U | 2016.07.16 | Urine | *** | 97.77 | USA: Florida |
| FL030U | 2016.08.02 | Urine | *** | 99.75 | USA: Florida |
| FL032U | 2016.08.05 | Urine | *** | 99.75 | USA: Florida |
| FL036Se | 2016.08.04 | Serum | *** | 99.73 | USA: Florida |
| FL038U | 2016.08.04 | Urine | *** | 99.76 | USA: Florida |
| FL039U | 2016.08.17 | Urine | **** | 99.75 | USA: Florida |
| Hu0015Sa | 2016.08.24 | Saliva | *** | 99.75 | USA: Florida |
| FL01M | 2016.08.22 | Mosquito | **** | 99.75 | USA: Florida |
| FL02M | 2016.08.23 | Mosquito | **** | 99.74 | USA: Florida |
| FL03M | 2016.08.23 | Mosquito | **** | 99.83 | USA: Florida |
| FL04M | 2016.09.04 | Mosquito | **** | 99.72 | USA: Florida |
| FL05M | 2016.09.09 | Mosquito | **** | 99.74 | USA: Florida |
| FL06M | 2016.09.20 | Mosquito | **** | 99.71 | USA: Florida |
| FL08M | 2016.10.05 | Mosquito | **** | 97.70 | USA: Florida |
| ZC188Se | 2016.01.16 | Serum | **** | 98.26 | Colombia |
| ZC192Se | 2016.01.07 | Serum | **** | 98.36 | Colombia |
| ZC204Se | 2016.01.06 | Serum | **** | 99.74 | Colombia |
| ZC207Se | 2016.01.09 | Serum | **** | 96.68 | Colombia |
| ZC199Se | 2016.01.10 | Serum | *** | 97.44 | Colombia |
| Hu0046Sa | 2017.04.18 | Saliva | **** | 98.20 | Cuba |
| FL046Se | 2017.07.26 | Serum | ** | 82.50 | Cuba |
| FL047U | 2017.08.08 | Urine | ** | 80.40 | Cuba |
| FL049U | 2017.09.24 | Urine | **** | 96.00 | Cuba |
| FL051Se | 2017.07.17 | Serum | **** | 98.40 | Cuba |
| FL052U | 2017.08.05 | Urine | ** | 86.50 | Cuba |
| FL055Se | 2017.08.13 | Serum | **** | 96.80 | Cuba |
| FL057U | 2017.07.17 | Urine | ** | 93.80 | Cuba |
| :--- | :--- | :--- | :--- | :--- | :--- |
| FL001Sa | 2016.03.22 | Saliva | *** | 99.71 | Martinique |
| FL008U | 2016.06.21 | Urine | *** | 90.07 | Puerto Rico |
| FL010U | 2016.06.22 | Urine | **** | 97.69 | USA: Florida |
| FL016U | 2016.07.03 | Urine | *** | 99.88 | Puerto Rico |
| FL021U | 2016.07.19 | Urine | *** | 97.45 | USA: Florida |
| FL022U | 2016.07.16 | Urine | *** | 97.77 | USA: Florida |
| FL030U | 2016.08.02 | Urine | *** | 99.75 | USA: Florida |
| FL032U | 2016.08.05 | Urine | *** | 99.75 | USA: Florida |
| FL036Se | 2016.08.04 | Serum | *** | 99.73 | USA: Florida |
| FL038U | 2016.08.04 | Urine | *** | 99.76 | USA: Florida |
| FL039U | 2016.08.17 | Urine | **** | 99.75 | USA: Florida |
| Hu0015Sa | 2016.08.24 | Saliva | *** | 99.75 | USA: Florida |
| FL01M | 2016.08.22 | Mosquito | **** | 99.75 | USA: Florida |
| FL02M | 2016.08.23 | Mosquito | **** | 99.74 | USA: Florida |
| FL03M | 2016.08.23 | Mosquito | **** | 99.83 | USA: Florida |
| FL04M | 2016.09.04 | Mosquito | **** | 99.72 | USA: Florida |
| FL05M | 2016.09.09 | Mosquito | **** | 99.74 | USA: Florida |
| FL06M | 2016.09.20 | Mosquito | **** | 99.71 | USA: Florida |
| FL08M | 2016.10.05 | Mosquito | **** | 97.70 | USA: Florida |
| ZC188Se | 2016.01.16 | Serum | **** | 98.26 | Colombia |
| ZC192Se | 2016.01.07 | Serum | **** | 98.36 | Colombia |
| ZC204Se | 2016.01.06 | Serum | **** | 99.74 | Colombia |
| ZC207Se | 2016.01.09 | Serum | **** | 96.68 | Colombia |
| ZC199Se | 2016.01.10 | Serum | *** | 97.44 | Colombia |
| Hu0046Sa | 2017.04.18 | Saliva | **** | 98.20 | Cuba |
| FL046Se | 2017.07.26 | Serum | ** | 82.50 | Cuba |
| FL047U | 2017.08.08 | Urine | ** | 80.40 | Cuba |
| FL049U | 2017.09.24 | Urine | **** | 96.00 | Cuba |
| FL051Se | 2017.07.17 | Serum | **** | 98.40 | Cuba |
| FL052U | 2017.08.05 | Urine | ** | 86.50 | Cuba |
| FL055Se | 2017.08.13 | Serum | **** | 96.80 | Cuba |
| FL057U | 2017.07.17 | Urine | ** | 93.80 | Cuba |
| FL082 | 2017-10-09 | Urine | ** | 98.20 | Cuba |
| FL257 | 2018-01-18 | Urine | ** | 98.30 | Cuba |

#### Quality
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