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refactory namechange - third round

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andersla committed Jun 13, 2019
1 parent 0e0a430 commit 2bbd25b580e9b6c887f0bef9cc2393a1e22e5804
Showing with 24 additions and 46 deletions.
  1. +1 −0 assseq-mac/Info.plist
  2. +23 −46 pom.xml
@@ -30,6 +30,7 @@
<string>GenericJavaApp.icns</string>
<key>CFBundleTypeExtensions</key>
<array>
<string>ace</string>
<string>nexus</string>
<string>nex</string>
<string>fasta</string>
69 pom.xml
@@ -10,7 +10,7 @@
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<project.bundle.mainclass>aliview.Assseq</project.bundle.mainclass>
<project.bundle.mainclass>assseq.Assseq</project.bundle.mainclass>
<project.organization.name>NBIS</project.organization.name>
<project.bundle.appname>Assseq</project.bundle.appname>
<project.bundle.icon>bla</project.bundle.icon>
@@ -77,14 +77,14 @@
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<finalName>aliview</finalName>
<finalName>assseq</finalName>
<appendAssemblyId>false</appendAssemblyId>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>aliview.Assseq</mainClass>
<mainClass>assseq.Assseq</mainClass>
</manifest>
<manifestEntries>
<SplashScreen-Image>img/splash_128x128.png</SplashScreen-Image>
@@ -99,7 +99,7 @@
<goal>single</goal>
</goals>
<configuration>
<finalName>aliview</finalName>
<finalName>assseq</finalName>
<fileMode>0755</fileMode>
<outputDirectory>target/windows-version-${project.version}</outputDirectory>
<appendAssemblyId>false</appendAssemblyId>
@@ -108,7 +108,7 @@
</descriptorRefs>
<archive>
<manifest>
<mainClass>aliview.Assseq</mainClass>
<mainClass>assseq.Assseq</mainClass>
</manifest>
<manifestEntries>
<SplashScreen-Image>img/splash_128x128.png</SplashScreen-Image>
@@ -123,16 +123,16 @@
<goal>single</goal>
</goals>
<configuration>
<finalName>aliview</finalName>
<finalName>assseq</finalName>
<fileMode>0755</fileMode>
<outputDirectory>target/linux-version-${project.version}/aliview/</outputDirectory>
<outputDirectory>target/linux-version-${project.version}/assseq/</outputDirectory>
<appendAssemblyId>false</appendAssemblyId>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>aliview.Assseq</mainClass>
<mainClass>assseq.Assseq</mainClass>
</manifest>
<manifestEntries>
<SplashScreen-Image>img/splash_128x128.png</SplashScreen-Image>
@@ -147,15 +147,15 @@
<goal>single</goal>
</goals>
<configuration>
<finalName>aliview</finalName>
<finalName>assseq</finalName>
<fileMode>0755</fileMode>
<appendAssemblyId>false</appendAssemblyId>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>aliview.Assseq</mainClass>
<mainClass>assseq.Assseq</mainClass>
</manifest>
<manifestEntries>
<SplashScreen-Image>img/splash_128x128.png</SplashScreen-Image>
@@ -179,7 +179,7 @@
<configuration>
<filesets>
<fileset>
<directory>target/windows-version-${project.version}/aliview.jar</directory>
<directory>target/windows-version-${project.version}/assseq.jar</directory>
<includes>
<include>muscle*linux*</include>
<include>muscle*darwin*</include>
@@ -198,7 +198,7 @@
<configuration>
<filesets>
<fileset>
<directory>target/aliview.jar</directory>
<directory>target/assseq.jar</directory>
<includes>
<include>muscle*linux*</include>
<include>muscle*.exe</include>
@@ -216,7 +216,7 @@
<configuration>
<filesets>
<fileset>
<directory>target/linux-version-${project.version}/aliview/aliview.jar</directory>
<directory>target/linux-version-${project.version}/assseq/assseq.jar</directory>
<includes>
<include>muscle*darwin*</include>
<include>muscle*mac*</include>
@@ -234,12 +234,12 @@
<artifactId>osxappbundle-maven-plugin</artifactId>
<version>1.0-alpha-2</version>
<configuration>
<mainClass>aliview.AliView</mainClass>
<dictionaryFile>${basedir}/aliview-mac/Info.plist</dictionaryFile>
<mainClass>assseq.Assseq</mainClass>
<dictionaryFile>${basedir}/assseq-mac/Info.plist</dictionaryFile>
<iconFile>${basedir}/src/main/resources/img/alignment_ico.icns</iconFile>
<version>${project.version}</version>
<myClasspath>$JAVAROOT/repo/AliView/AliView/${project.version}/AliView-${project.version}.jar</myClasspath>
<javaApplicationStub>${basedir}/aliview-mac/universalJavaApplicationStub/universalJavaApplicationStub</javaApplicationStub>
<myClasspath>$JAVAROOT/repo/Assseq/Assseq/${project.version}/Assseq-${project.version}.jar</myClasspath>
<javaApplicationStub>${basedir}/assseq-mac/universalJavaApplicationStub/universalJavaApplicationStub</javaApplicationStub>
</configuration>
<executions>
<execution>
@@ -266,32 +266,13 @@
<files>
<file>
<source>${basedir}/src/main/resources/img/splash_128x128.png</source>
<outputDirectory>target/AliView-${project.version}/AliView.app/Contents/Resources/</outputDirectory>
<outputDirectory>target/Assseq-${project.version}/Assseq.app/Contents/Resources/</outputDirectory>
</file>
</files>
</configuration>
</execution>
<!--
<execution>
<id>add-second-stubfile</id>
<goals>
<goal>copy</goal>
</goals>
<phase>package</phase>
<configuration>

<fileset>
<directory>${basedir}/aliview-mac/</directory>
<includes>
<include>JavaApplicationStub</include>
</includes>
<outputDirectory>target/AliView-${project.version}/AliView.app/Contents/MacOS/</outputDirectory>
<fileMode>0755</fileMode>
</fileset>

</configuration>
</execution>
-->
<execution>
<id>remove-jar-files-from-osx-bundle-since-they-are-unpacked-in-ailiview-jar-already</id>
<goals>
@@ -329,15 +310,11 @@
</goals>
<configuration>
<headerType>gui</headerType>
<outfile>target/windows-version-${project.version}/AliView.exe</outfile>
<jar>target/windows-version-${project.version}/aliview.jar</jar>
<!--
<outfile>target/windows-version-${project.version}/AliView.exe</outfile>
<jar>target/windows/aliview.jar</jar>
-->
<outfile>target/windows-version-${project.version}/Assseq.exe</outfile>
<jar>target/windows-version-${project.version}/assseq.jar</jar>
<errTitle>App Err</errTitle>
<classPath>
<mainClass>aliview.AliView</mainClass>
<mainClass>assseq.Assseq</mainClass>
</classPath>
<icon>icon_images/win/alignment_multi.ico</icon>
<jre>
@@ -359,8 +336,8 @@
<copyright>C</copyright>
<productVersion>1.0.0.0</productVersion>
<txtProductVersion>1.0.0.0</txtProductVersion>
<productName>AliView</productName>
<internalName>AliView</internalName>
<productName>Assseq</productName>
<internalName>Assseq</internalName>
<originalFilename>App.exe</originalFilename>
</versionInfo>
</configuration>

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