Tutorial for the Common Workflow Language using SnpEff
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README.md

cwl-tutorial

This repo contains the code for a tutorial on the Common Workflow Language

You can run the workflow using:

git clone git@github:andrewjesaitis/cwl-tutorial
cd cwl-tutorial
docker build --tag=andrewjesaitis/snpeff .
pip install cwltool
cwltool snpff-workflow.cwl 1kg-job.yml