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dont hardcode path to gubbins

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1 parent aaa4ed9 commit 5b86da560e65521a1c2121f6eede9ebfef615567 @andrewjpage committed May 8, 2012
Showing with 2 additions and 1 deletion.
  1. +1 −0 .gitignore
  2. +1 −1 run_gubbins.py
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1 .gitignore
@@ -1,6 +1,7 @@
*.o
gubbins
tests/run_all_tests
+src/run_all_tests
.DS_Store
Makefile
src/.deps
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2 run_gubbins.py
@@ -16,7 +16,7 @@
RAXML_EXEC = 'raxmlHPC -f d -m GTRGAMMA'
FASTTREE_EXEC = 'FastTree'
FASTTREE_PARAMS = '-gtr -gamma -nt'
-GUBBINS_EXEC = './src/gubbins'
+GUBBINS_EXEC = 'gubbins'
def robinson_foulds_distance(input_tree_name,output_tree_name):
input_tree = dendropy.Tree.get_from_path(input_tree_name, 'newick')

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