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1 parent ba837f1 commit 92c72a0a9000a6621ceafab17af095d96364111f @andrewjpage committed Nov 2, 2012
Showing with 9 additions and 1 deletion.
  1. +3 −1 AUTHORS
  2. +6 −0 ChangeLog
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@@ -1,2 +1,4 @@
+Nicholas Croucher <croucher@hsph.harvard.edu>
+Aidan Delaney <a.j.delaney@brighton.ac.uk>
+Simon Harris <sh16@sanger.ac.uk>
Andrew J. Page <ap13@sanger.ac.uk>
-Aidan Delaney <a.j.delaney@brighton.ac.uk>
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@@ -1,3 +1,9 @@
+2012-11-2 Andrew J. Page <ap13@sanger.ac.uk>
+* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this).
+* SNPs are outputted on a per branch basis in tab format.
+* The stats are now on a per branch basis rather than cumulatively built up from walking the tree.
+* Node labelling in the recombination tab file now consistent with the tree internal node labels
+
2012-8-7 Andrew J. Page <ap13@sanger.ac.uk>
* Cleanup intermediate files by default
* Fix RF distance calculation and comparison

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