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Makefile.am
Newickform.c
Newickform.h
PyGubbins.cpp
alignment_file.c
alignment_file.h
block_tab_file.c
block_tab_file.h
branch_sequences.c
branch_sequences.h
fasta_of_snp_sites.c
fasta_of_snp_sites.h
gff_file.c
gff_file.h
gubbins.c
gubbins.h
kseq.h
main.c
parse_phylip.c
parse_phylip.h
parse_vcf.c
parse_vcf.h
phylip_of_snp_sites.c
phylip_of_snp_sites.h
seqUtil.c
seqUtil.h
snp_searching.c
snp_searching.h
snp_sites.c
snp_sites.h
string_cat.c
string_cat.h
tree_scaling.c
tree_scaling.h
tree_statistics.c
tree_statistics.h
vcf.c
vcf.h