From 3e79101fe72895528da204d77317afa2b4fe0c3e Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 1 Jul 2024 17:32:56 +0000
Subject: [PATCH 1/3] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/python-jsonschema/check-jsonschema: 0.28.2 → 0.28.6](https://github.com/python-jsonschema/check-jsonschema/compare/0.28.2...0.28.6)
- [github.com/psf/black-pre-commit-mirror: 23.12.1 → 24.4.2](https://github.com/psf/black-pre-commit-mirror/compare/23.12.1...24.4.2)
- [github.com/PyCQA/flake8: 7.0.0 → 7.1.0](https://github.com/PyCQA/flake8/compare/7.0.0...7.1.0)
- [github.com/PyCQA/bandit: 1.7.8 → 1.7.9](https://github.com/PyCQA/bandit/compare/1.7.8...1.7.9)
- [github.com/markdownlint/markdownlint: v0.9.0 → v0.12.0](https://github.com/markdownlint/markdownlint/compare/v0.9.0...v0.12.0)
---
 .pre-commit-config.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e341a39..db2f5c8 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -108,7 +108,7 @@ repos:
       - id: "check-pre-commit-ci-config"
 
   - repo: "https://github.com/python-jsonschema/check-jsonschema"
-    rev: "0.28.2"
+    rev: "0.28.6"
     hooks:
       # Validate Dependabot Config (v2) against the schema provided by
       # SchemaStore.
@@ -163,7 +163,7 @@ repos:
   - repo: "https://github.com/psf/black-pre-commit-mirror"
     # Stay at black version 23, because some formatting rules change in
     # version 24.
-    rev: "23.12.1"
+    rev: "24.4.2"
     hooks:
       # Format Python code with black.
       - id: "black"
@@ -176,7 +176,7 @@ repos:
           - "--color"
 
   - repo: "https://github.com/PyCQA/flake8"
-    rev: "7.0.0"
+    rev: "7.1.0"
     hooks:
       # Lint Python code with Flake8.
       - id: "flake8"
@@ -195,7 +195,7 @@ repos:
           - "pep8-naming >=0.1, <1.0"
 
   - repo: "https://github.com/PyCQA/bandit"
-    rev: "1.7.8"
+    rev: "1.7.9"
     hooks:
       # Check code security with bandit.
       - id: "bandit"
@@ -264,7 +264,7 @@ repos:
     # v0.12.0 requires ruby2.7
     # v0.11.0 and v0.10.0 require ruby2.6
     # => stay at v0.9.0
-    rev: "v0.9.0"
+    rev: "v0.12.0"
     hooks:
       # Lint Markdown files with markdownlint.
       - id: "markdownlint"

From d826f724b33267d979e8440496fd39c49b36ecf7 Mon Sep 17 00:00:00 2001
From: andthum <56444687+andthum@users.noreply.github.com>
Date: Fri, 19 Jul 2024 08:41:40 +0200
Subject: [PATCH 2/3] [.pre-commit-config.yaml]: Update

Updates:
* https://github.com/python-jsonschema/check-jsonschema
  from `0.28.6` to `0.29.0`.

Downgrades:
* https://github.com/psf/black-pre-commit-mirror
  from `24.4.2` to `23.12.1`.
* https://github.com/markdownlint/markdownlint
  from `v0.12.0` to `v0.9.0`.
---
 .pre-commit-config.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index db2f5c8..b6822f8 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -108,7 +108,7 @@ repos:
       - id: "check-pre-commit-ci-config"
 
   - repo: "https://github.com/python-jsonschema/check-jsonschema"
-    rev: "0.28.6"
+    rev: "0.29.0"
     hooks:
       # Validate Dependabot Config (v2) against the schema provided by
       # SchemaStore.
@@ -162,8 +162,8 @@ repos:
 
   - repo: "https://github.com/psf/black-pre-commit-mirror"
     # Stay at black version 23, because some formatting rules change in
-    # version 24.
-    rev: "24.4.2"
+    # version 24.  Latest 23 version is 23.12.1.
+    rev: "23.12.1"
     hooks:
       # Format Python code with black.
       - id: "black"
@@ -264,7 +264,7 @@ repos:
     # v0.12.0 requires ruby2.7
     # v0.11.0 and v0.10.0 require ruby2.6
     # => stay at v0.9.0
-    rev: "v0.12.0"
+    rev: "v0.9.0"
     hooks:
       # Lint Markdown files with markdownlint.
       - id: "markdownlint"

From 1ddf59a9e5441886ab70451d299a118b82990498 Mon Sep 17 00:00:00 2001
From: andthum <56444687+andthum@users.noreply.github.com>
Date: Fri, 19 Jul 2024 09:09:26 +0200
Subject: [PATCH 3/3] [conf.py]: Linkcheck: Extend List of Ignored URLs

Ignore the URL of the Palma confluence wiki
(https://confluence.uni-muenster.de), because it is only reachable
within the university network.
---
 docs/source/conf.py | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index f9e2f67..48b8f80 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -440,6 +440,17 @@
 text_secnumber_suffix = html_secnumber_suffix
 
 
+# -- Options for the linkcheck builder ---------------------------------
+
+# List of regular expressions that match URIs that should not be checked
+# when running `make linkcheck`.
+linkcheck_ignore = [
+    # Errno 110 Connection timed out.
+    r"https://confluence\.uni-muenster\.de.",
+]
+linkcheck_retries = 2
+
+
 # -- Extension configuration -------------------------------------------
 # -- Options for autodoc extension -------------------------------------