Pinned

1. Pathogen-Genomics-Cymru/tb-pipeline Public

   Python 3 4

2. Pathogen-Genomics-Cymru/covate Public

   Predicts time series for SARS-CoV-2 lineages

   Python 1

3. CLIMB-BIG-DATA/containers Public

   Dockerfiles for CLIMB-BIG-DATA. Built and pushed to quay.io using GitHub Actions

   Roff

4. Bioinfo-skills-2022-CLIMB-VM/Assemble-a-microbial-genome-using-containers Public

   Learn the basics of Docker and Singularity

   1

5. autodatabase Public

   automated kraken database build using nextflow DSL2

   Nextflow 5

6. pdf-scraper Public

   PDF parser using pdfminer and pytesseract for OCR support

   Python 5 1