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py_mbl_sequencing_pipeline
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IlluminaUtils
config
pipeline
suites
test
.gitignore
Capfile
ConMySQL.py
README
README.md
TODO
__init__.py
pipeline-ui.py
pipelineprocessor.py
run_tests.py

README.md

py_mbl_sequencing_pipeline

Feb 21 2018

Changes in Versions:

Python 3.6.0
vsearch v2.3.4_linux_x86_64, 125.8GB RAM, 12 cores
Illumina-utils v2.2
5.6.30-log MySQL Community Server (GPL)
fastaunique Feb 10 2018
mysqlimport Ver 3.7 Distrib 5.6.12, for linux-glibc2.5 (x86_64)
gast_ill Feb 6 2018

May 16 2016

Current pipeline version is 2.0.

Versions:

Python 2.7.11
vsearch v1.9.5_linux_x86_64, 47.2GB RAM, 4 cores (https://github.com/torognes/vsearch)
Silva 119 (https://www.arb-silva.de/no_cache/download/archive/release_119/Exports/)
Illumina-utils v1.4.7 (https://github.com/meren/illumina-utils)
5.5.15-log MySQL Community Server (GPL)
fastaunique Nov 2 2012
fastasampler Nov 6 2015
calcnodes Apr 12 2010
mysqlimport Ver 3.7 Distrib 5.5.32, for linux2.6 (x86_64)
clustergast_tophit Aug 11 2012
clusterize_vamps Dec 2 13:43
gast_ill Aug 3 2015

Apr 1 2015

vsearch

Feb 3 2015

Illumina-utils v1.1

Jan 29 2014

usearch64

Jun 18 2013

usearch 6.0.217/x86

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