B-cell 454 processing
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README.md

README.md

IgSCUEAL

This collection of HyPhy, Python, and JavaScript (d3) scripts is a working version of a pipeline to process Immunoglobulins B-cell transcript sequences. It is adapted from our genetic algorithm for HIV-1 subtyping - SCUEAL, hence the name

For optimal performance, IgSCUEAL should be run using the MPI version of HyPhy on a cluster.

See the wiki for (some) documentation, and usage examples.