📝 [Publication] Exploring the landscape of specific TCR precursor frequencies
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annotations
rearr_model
rebuttal
struct
vdjdb_dump
.gitignore
README.md
epitope-hla.Rmd
epitope-hla.pdf
epitope-len.Rmd
epitope-len.pdf
epitope-race.Rmd
epitope-race.pdf
epitope-sex.Rmd
epitope-sex.pdf
epitope-sex2.Rmd
epitope-sex2.pdf
epitope-ucb.Rmd
epitope-ucb.pdf
immunogenicity.Rmd
immunogenicity.pdf
immunogenicity.txt
kidera.txt
martin-lavery.txt
public-epitope.Rmd
public-epitope.pdf
summary.Rmd

README.md

Contents:

  • All the analysis can be found in *.Rmd files, those are notebooks that can be executed in RStudio.

  • The version of VDJdb used for the analysis can be found in vdjdb_dump/ folder.

  • Rearrangement probabilities can be found in rearr_model/ folder.

  • Annotated RepSeq datasets can be found in annotations/ folder.