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antiSMASH REST-LIKE API

Build Status

This is the REST-like API powering http://antismash.secondarymetabolites.org/

Installation

pip install -r requirements.txt

Running the API

First, create a settings.cfg file:

############# Configuration #############
DEBUG = False
SECRET_KEY = "Better put a proper secret here"
# Path to antiSMASH output directory on disk
RESULTS_PATH = '/data/antismash/upload'
# URL path to antiSMASH results in the webapp
RESULTS_URL = '/upload'

# Flask-Mail settings
DEFAULT_RECIPIENTS = ["alice@example.com", "bob@example.com"]

# Redis settings
REDIS_URL = 'redis://your.redis.database:port/number'
# defaults to redis://localhost:6379/0
# You can also point at a Redis Sentinel instance using 'sentinel://sentinel.address:port/number'
#########################################

Then export the path to the settings file as WEBSMASH_CONFIG environment variable and use a WSGI runner of your choice to run the app (I'm using uwsgi in this example).

export WEBSMASH_CONFIG=/var/www/settings.cfg
uwsgi --pythonpath /var/www --http :5000 --module websmash:app --uid 33 --gid 33 --touch-reload /tmp/reload_websmash --daemonize /var/log/uwsgi.log

Now you can connect to the antiSMASH web api at port 5000. Now set up a reverse proxy to serve the web api from port 80.

License

Just like antiSMASH, the web interface is available under the GNU AGPL version 3. See the LICENSE.txt file for details.

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A REST-like API for running antiSMASH style jobs

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