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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,6 @@
import java.util.Collection;
import org.apache.beam.runners.direct.DirectOptions;
import org.apache.beam.sdk.PipelineResult;
import org.apache.beam.sdk.extensions.gcp.options.GcpOptions;
import org.apache.beam.sdk.io.gcp.pubsub.PubsubClient;
import org.apache.beam.sdk.io.gcp.pubsub.PubsubClient.SubscriptionPath;
import org.apache.beam.sdk.io.gcp.pubsub.PubsubClient.TopicPath;
Expand Down Expand Up @@ -72,7 +71,10 @@ public FhirIOReadIT(String version) {
long testTime = System.currentTimeMillis();
this.fhirStoreName =
"FHIR_store_" + version + "_write_it_" + testTime + "_" + (new SecureRandom().nextInt(32));
this.project = TestPipeline.testingPipelineOptions().as(GcpOptions.class).getProject();
this.project =
TestPipeline.testingPipelineOptions()
.as(HealthcareStoreTestPipelineOptions.class)
.getStoreProjectId();
this.pubsubTopic =
"projects/"
+ project
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,8 @@
import org.apache.beam.sdk.options.Default;
import org.apache.beam.sdk.options.Description;
import org.apache.beam.sdk.options.Validation.Required;
import org.apache.beam.sdk.testing.TestPipelineOptions;

public interface FhirIOTestOptions extends TestPipelineOptions {
public interface FhirIOTestOptions extends HealthcareStoreTestPipelineOptions {

@Description(
"FHIR store should match the pattern: projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/HL7V2_STORE_ID")
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,6 @@
import java.util.Arrays;
import java.util.Collection;
import org.apache.beam.sdk.Pipeline;
import org.apache.beam.sdk.extensions.gcp.options.GcpOptions;
import org.apache.beam.sdk.io.gcp.healthcare.FhirIO.Import.ContentStructure;
import org.apache.beam.sdk.options.PipelineOptionsFactory;
import org.apache.beam.sdk.testing.PAssert;
Expand Down Expand Up @@ -71,14 +70,22 @@ public void setup() throws Exception {
client = new HttpHealthcareApiClient();
}
PipelineOptionsFactory.register(FhirIOTestOptions.class);
String project = TestPipeline.testingPipelineOptions().as(GcpOptions.class).getProject();
String project =
TestPipeline.testingPipelineOptions()
.as(HealthcareStoreTestPipelineOptions.class)
.getStoreProjectId();
healthcareDataset = String.format(HEALTHCARE_DATASET_TEMPLATE, project);
options = TestPipeline.testingPipelineOptions().as(FhirIOTestOptions.class);
options.setGcsTempPath(
String.format("gs://%s/FhirIOWrite%sIT/%s/temp/", DEFAULT_TEMP_BUCKET, version, testTime));
options.setGcsDeadLetterPath(
String.format(
"gs://%s/FhirIOWrite%sIT/%s/deadletter/", DEFAULT_TEMP_BUCKET, version, testTime));
if (options.getGcsTempPath() == null) {
options.setGcsTempPath(
String.format(
"gs://%s/FhirIOWrite%sIT/%s/temp/", DEFAULT_TEMP_BUCKET, version, testTime));
}
if (options.getGcsDeadLetterPath() == null) {
options.setGcsDeadLetterPath(
String.format(
"gs://%s/FhirIOWrite%sIT/%s/deadletter/", DEFAULT_TEMP_BUCKET, version, testTime));
}
options.setFhirStore(healthcareDataset + "/fhirStores/" + fhirStoreName);
HealthcareApiClient client = new HttpHealthcareApiClient();
client.createFhirStore(healthcareDataset, fhirStoreName, version);
Expand Down Expand Up @@ -111,7 +118,9 @@ public void testFhirIO_ExecuteBundle() throws IOException {
@Test
public void testFhirIO_Import() {
Pipeline pipeline = Pipeline.create(options);
options.setTempLocation("gs://temp-storage-for-healthcare-io-tests");
if (options.getTempLocation() == null) {
options.setTempLocation("gs://temp-storage-for-healthcare-io-tests");
}
FhirIO.Write.Result result =
pipeline
.apply(Create.of(BUNDLES.get(version)))
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,6 @@
import java.io.IOException;
import java.security.SecureRandom;
import org.apache.beam.sdk.Pipeline;
import org.apache.beam.sdk.extensions.gcp.options.GcpOptions;
import org.apache.beam.sdk.testing.PAssert;
import org.apache.beam.sdk.testing.TestPipeline;
import org.apache.beam.sdk.transforms.Count;
Expand All @@ -52,11 +51,15 @@ public class HL7v2IOReadIT {
+ "_"
+ (new SecureRandom().nextInt(32))
+ "_read_it";

@Rule public transient TestPipeline pipeline = TestPipeline.create();

@BeforeClass
public static void createHL7v2tore() throws IOException {
String project = TestPipeline.testingPipelineOptions().as(GcpOptions.class).getProject();
String project =
TestPipeline.testingPipelineOptions()
.as(HealthcareStoreTestPipelineOptions.class)
.getStoreProjectId();
healthcareDataset = String.format(HEALTHCARE_DATASET_TEMPLATE, project);
HealthcareApiClient client = new HttpHealthcareApiClient();
client.createHL7v2Store(healthcareDataset, HL7V2_STORE_NAME);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,6 @@
import java.security.SecureRandom;
import java.util.Collections;
import java.util.concurrent.TimeoutException;
import org.apache.beam.sdk.extensions.gcp.options.GcpOptions;
import org.apache.beam.sdk.io.gcp.healthcare.HL7v2IOTestUtil.ListHL7v2MessageIDs;
import org.apache.beam.sdk.testing.PAssert;
import org.apache.beam.sdk.testing.TestPipeline;
Expand Down Expand Up @@ -61,7 +60,10 @@ public class HL7v2IOReadWriteIT {

@BeforeClass
public static void createHL7v2tores() throws IOException {
String project = TestPipeline.testingPipelineOptions().as(GcpOptions.class).getProject();
String project =
TestPipeline.testingPipelineOptions()
.as(HealthcareStoreTestPipelineOptions.class)
.getStoreProjectId();
healthcareDataset = String.format(HEALTHCARE_DATASET_TEMPLATE, project);
HealthcareApiClient client = new HttpHealthcareApiClient();
client.createHL7v2Store(healthcareDataset, INPUT_HL7V2_STORE_NAME);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,6 @@
import java.io.IOException;
import java.security.SecureRandom;
import java.util.concurrent.TimeoutException;
import org.apache.beam.sdk.extensions.gcp.options.GcpOptions;
import org.apache.beam.sdk.testing.PAssert;
import org.apache.beam.sdk.testing.TestPipeline;
import org.apache.beam.sdk.transforms.Create;
Expand All @@ -53,7 +52,10 @@ public class HL7v2IOWriteIT {

@BeforeClass
public static void createHL7v2tore() throws IOException {
String project = TestPipeline.testingPipelineOptions().as(GcpOptions.class).getProject();
String project =
TestPipeline.testingPipelineOptions()
.as(HealthcareStoreTestPipelineOptions.class)
.getStoreProjectId();
healthcareDataset = String.format(HEALTHCARE_DATASET_TEMPLATE, project);
HealthcareApiClient client = new HttpHealthcareApiClient();
Hl7V2Store store = client.createHL7v2Store(healthcareDataset, HL7V2_STORE_NAME);
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,31 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.beam.sdk.io.gcp.healthcare;

import org.apache.beam.sdk.options.Default;
import org.apache.beam.sdk.options.Description;
import org.apache.beam.sdk.testing.TestPipelineOptions;

/** Pipeline options for HL7v2 pipelines. */
public interface HealthcareStoreTestPipelineOptions extends TestPipelineOptions {
@Description("Project that hosts HL7v2 store")
@Default.String("apache-beam-testing")
String getStoreProjectId();

void setStoreProjectId(String value);
}